org.visallo.vertexium.model.ontology

Class InMemoryOntologyRepository

java.lang.Object

org.visallo.core.model.ontology.OntologyRepositoryBase

org.visallo.vertexium.model.ontology.InMemoryOntologyRepository

All Implemented Interfaces:

OntologyRepository

public class InMemoryOntologyRepository
extends OntologyRepositoryBase

Field Summary

Fields inherited from class org.visallo.core.model.ontology.OntologyRepositoryBase

BASE_OWL_IRI, COMMENT_OWL_IRI, RESOURCE_ENTITY_PNG

Fields inherited from interface org.visallo.core.model.ontology.OntologyRepository

CONFIG_INTENT_CONCEPT_PREFIX, CONFIG_INTENT_PROPERTY_PREFIX, CONFIG_INTENT_RELATIONSHIP_PREFIX, ENTITY_CONCEPT_IRI, ROOT_CONCEPT_IRI, TYPE_CONCEPT, TYPE_PROPERTY, TYPE_RELATIONSHIP, VISIBILITY, VISIBILITY_STRING

Constructor Summary

Constructors

Constructor and Description
InMemoryOntologyRepository(org.vertexium.Graph graph, Configuration configuration, LockRepository lockRepository)

Method Summary

Modifier and Type	Method and Description
protected void	addEntityGlyphIconToEntityConcept(Concept entityConcept, byte[] rawImg)
protected OntologyProperty	addPropertyTo(List<Concept> concepts, List<Relationship> relationships, String propertyIri, String displayName, org.visallo.web.clientapi.model.PropertyType dataType, Map<String,String> possibleValues, Collection<org.vertexium.TextIndexHint> textIndexHints, boolean userVisible, boolean searchable, boolean addable, boolean sortable, String displayType, String propertyGroup, Double boost, String validationFormula, String displayFormula, com.google.common.collect.ImmutableList<String> dependentPropertyIris, String[] intents, boolean deleteable, boolean updateable)
void	clearCache()
protected List<Concept>	getChildConcepts(Concept concept)
protected List<Relationship>	getChildRelationships(Relationship relationship)
Iterable<Concept>	getConceptsWithProperties()
String	getDisplayNameForLabel(String relationshipIRI)
Concept	getEntityConcept()
protected org.vertexium.Graph	getGraph()
Concept	getOrCreateConcept(Concept parent, String conceptIRI, String displayName, File inDir)
Concept	getOrCreateConcept(Concept parent, String conceptIRI, String displayName, File inDir, boolean isDeclaredInOntology)
protected void	getOrCreateInverseOfRelationship(Relationship fromRelationship, Relationship inverseOfRelationship)
Relationship	getOrCreateRelationshipType(Relationship parent, Iterable<Concept> domainConcepts, Iterable<Concept> rangeConcepts, String relationshipIRI)
Concept	getParentConcept(Concept concept)
Iterable<OntologyProperty>	getProperties()
OntologyProperty	getPropertyByIRI(String propertyIRI)
Relationship	getRelationshipByIRI(String relationshipIRI)
Iterable<Relationship>	getRelationships()
boolean	hasRelationshipByIRI(String relationshipIRI)
protected Relationship	importObjectProperty(org.semanticweb.owlapi.model.OWLOntology o, org.semanticweb.owlapi.model.OWLObjectProperty objectProperty, org.vertexium.Authorizations authorizations)
protected Concept	importOntologyClass(org.semanticweb.owlapi.model.OWLOntology o, org.semanticweb.owlapi.model.OWLClass ontologyClass, File inDir, org.vertexium.Authorizations authorizations)
boolean	isOntologyDefined(String iri)
protected List<org.semanticweb.owlapi.model.OWLOntology>	loadOntologyFiles(org.semanticweb.owlapi.model.OWLOntologyManager m, org.semanticweb.owlapi.model.OWLOntologyLoaderConfiguration config, org.semanticweb.owlapi.model.IRI excludedIRI)
protected void	setIconProperty(Concept concept, File inDir, String glyphIconFileName, String propertyKey, org.vertexium.Authorizations authorizations)
protected void	storeOntologyFile(InputStream inputStream, org.semanticweb.owlapi.model.IRI documentIRI)
void	updatePropertyDependentIris(OntologyProperty property, Collection<String> dependentPropertyIris)
void	updatePropertyDomainIris(OntologyProperty property, Set<String> domainIris)

Methods inherited from class org.visallo.core.model.ontology.OntologyRepositoryBase

addConceptTypeFilterToQuery, addEdgeLabelFilterToQuery, createOwlOntologyManager, definePropertyOnGraph, determineSearchable, findOwlFile, getClientApiObject, getConceptAndAllChildren, getConceptAndAllChildrenByIri, getConceptByIntent, getConceptByIRI, getConceptIRIByIntent, getConfiguration, getDependentPropertyParent, getOrCreateProperty, getParentConcept, getPropertiesByIntent, getPropertyByIntent, getPropertyIRIByIntent, getRelationshipAndAllChildren, getRelationshipByIntent, getRelationshipIRIByIntent, getRequiredConceptByIntent, getRequiredConceptByIRI, getRequiredConceptIRIByIntent, getRequiredPropertyByIntent, getRequiredPropertyByIRI, getRequiredPropertyIRIByIntent, getRequiredRelationshipByIntent, getRequiredRelationshipIRIByIntent, getRequiredVisalloPropertyByIntent, getVisalloPropertyByIntent, guessDocumentIRIFromFile, guessDocumentIRIFromPackage, importDataProperty, importFile, importFileData, importInverseOf, importOntologyAnnotationProperties, importOntologyAnnotationProperty, importResourceOwl, loadOntologies, resolvePropertyIds, writePackage

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

InMemoryOntologyRepository

@Inject
public InMemoryOntologyRepository(org.vertexium.Graph graph,
                                          Configuration configuration,
                                          LockRepository lockRepository)
                                   throws Exception

Throws:

Exception

Method Detail

importOntologyClass

protected Concept importOntologyClass(org.semanticweb.owlapi.model.OWLOntology o,
                                      org.semanticweb.owlapi.model.OWLClass ontologyClass,
                                      File inDir,
                                      org.vertexium.Authorizations authorizations)
                               throws IOException

Overrides:

importOntologyClass in class OntologyRepositoryBase

Throws:

IOException

importObjectProperty

protected Relationship importObjectProperty(org.semanticweb.owlapi.model.OWLOntology o,
                                            org.semanticweb.owlapi.model.OWLObjectProperty objectProperty,
                                            org.vertexium.Authorizations authorizations)

Overrides:

importObjectProperty in class OntologyRepositoryBase

setIconProperty

protected void setIconProperty(Concept concept,
                               File inDir,
                               String glyphIconFileName,
                               String propertyKey,
                               org.vertexium.Authorizations authorizations)
                        throws IOException

Overrides:

setIconProperty in class OntologyRepositoryBase

Throws:

IOException

addEntityGlyphIconToEntityConcept

protected void addEntityGlyphIconToEntityConcept(Concept entityConcept,
                                                 byte[] rawImg)

Specified by:

addEntityGlyphIconToEntityConcept in class OntologyRepositoryBase

storeOntologyFile

protected void storeOntologyFile(InputStream inputStream,
                                 org.semanticweb.owlapi.model.IRI documentIRI)

Specified by:

storeOntologyFile in class OntologyRepositoryBase

isOntologyDefined

public boolean isOntologyDefined(String iri)

Specified by:

isOntologyDefined in interface OntologyRepository

Specified by:

isOntologyDefined in class OntologyRepositoryBase

updatePropertyDependentIris

public void updatePropertyDependentIris(OntologyProperty property,
                                        Collection<String> dependentPropertyIris)

loadOntologyFiles

protected List<org.semanticweb.owlapi.model.OWLOntology> loadOntologyFiles(org.semanticweb.owlapi.model.OWLOntologyManager m,
                                                                           org.semanticweb.owlapi.model.OWLOntologyLoaderConfiguration config,
                                                                           org.semanticweb.owlapi.model.IRI excludedIRI)
                                                                    throws Exception

Specified by:

loadOntologyFiles in class OntologyRepositoryBase

Throws:

Exception

addPropertyTo

protected OntologyProperty addPropertyTo(List<Concept> concepts,
                                         List<Relationship> relationships,
                                         String propertyIri,
                                         String displayName,
                                         org.visallo.web.clientapi.model.PropertyType dataType,
                                         Map<String,String> possibleValues,
                                         Collection<org.vertexium.TextIndexHint> textIndexHints,
                                         boolean userVisible,
                                         boolean searchable,
                                         boolean addable,
                                         boolean sortable,
                                         String displayType,
                                         String propertyGroup,
                                         Double boost,
                                         String validationFormula,
                                         String displayFormula,
                                         com.google.common.collect.ImmutableList<String> dependentPropertyIris,
                                         String[] intents,
                                         boolean deleteable,
                                         boolean updateable)

Specified by:

addPropertyTo in class OntologyRepositoryBase

updatePropertyDomainIris

public void updatePropertyDomainIris(OntologyProperty property,
                                     Set<String> domainIris)

getOrCreateInverseOfRelationship

protected void getOrCreateInverseOfRelationship(Relationship fromRelationship,
                                                Relationship inverseOfRelationship)

Specified by:

getOrCreateInverseOfRelationship in class OntologyRepositoryBase

clearCache

public void clearCache()

getRelationships

public Iterable<Relationship> getRelationships()

getProperties

public Iterable<OntologyProperty> getProperties()

getDisplayNameForLabel

public String getDisplayNameForLabel(String relationshipIRI)

getPropertyByIRI

public OntologyProperty getPropertyByIRI(String propertyIRI)

Specified by:

getPropertyByIRI in interface OntologyRepository

Overrides:

getPropertyByIRI in class OntologyRepositoryBase

getRelationshipByIRI

public Relationship getRelationshipByIRI(String relationshipIRI)

Specified by:

getRelationshipByIRI in interface OntologyRepository

Overrides:

getRelationshipByIRI in class OntologyRepositoryBase

hasRelationshipByIRI

public boolean hasRelationshipByIRI(String relationshipIRI)

getConceptsWithProperties

public Iterable<Concept> getConceptsWithProperties()

getEntityConcept

public Concept getEntityConcept()

getParentConcept

public Concept getParentConcept(Concept concept)

getChildConcepts

protected List<Concept> getChildConcepts(Concept concept)

Specified by:

getChildConcepts in class OntologyRepositoryBase

getChildRelationships

protected List<Relationship> getChildRelationships(Relationship relationship)

Specified by:

getChildRelationships in class OntologyRepositoryBase

getOrCreateConcept

public Concept getOrCreateConcept(Concept parent,
                                  String conceptIRI,
                                  String displayName,
                                  File inDir)

getOrCreateConcept

public Concept getOrCreateConcept(Concept parent,
                                  String conceptIRI,
                                  String displayName,
                                  File inDir,
                                  boolean isDeclaredInOntology)

getOrCreateRelationshipType

public Relationship getOrCreateRelationshipType(Relationship parent,
                                                Iterable<Concept> domainConcepts,
                                                Iterable<Concept> rangeConcepts,
                                                String relationshipIRI)

getGraph

protected org.vertexium.Graph getGraph()