GenerateSegments (mmtf-spark 0.0.8 API)

java.lang.Object
- org.rcsb.mmtf.spark.mappers.GenerateSegments

All Implemented Interfaces:

java.io.Serializable, org.apache.spark.api.java.function.PairFlatMapFunction<scala.Tuple2<java.lang.String,org.rcsb.mmtf.api.StructureDataInterface>,java.lang.String,Segment>
```
public class GenerateSegments
extends java.lang.Object
implements org.apache.spark.api.java.function.PairFlatMapFunction<scala.Tuple2<java.lang.String,org.rcsb.mmtf.api.StructureDataInterface>,java.lang.String,Segment>
```
A mapper from StructureDataInterface to the Point3d[] of the calpha coordinates.

Author:

Anthony Bradley

See Also:

Serialized Form

Constructor Summary

Constructors
Constructor Description

GenerateSegments(java.lang.Integer fragmentLength)
Constructor of the class.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`java.util.Iterator<scala.Tuple2<java.lang.String,Segment>>`	`call(scala.Tuple2<java.lang.String,org.rcsb.mmtf.api.StructureDataInterface> t)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - GenerateSegments
```
public GenerateSegments(java.lang.Integer fragmentLength)
```
    Constructor of the class.
    
    Parameters:
    
    fragmentLength - the length of each fragment. Null means take each Chain as as single fragment.
- Method Detail
  - call
```
public java.util.Iterator<scala.Tuple2<java.lang.String,Segment>> call(scala.Tuple2<java.lang.String,org.rcsb.mmtf.api.StructureDataInterface> t)
                                                                      throws java.lang.Exception
```
    Specified by:
    
    call in interface org.apache.spark.api.java.function.PairFlatMapFunction<scala.Tuple2<java.lang.String,org.rcsb.mmtf.api.StructureDataInterface>,java.lang.String,Segment>
    
    Throws:
    
    java.lang.Exception