Uses of Class
org.rcsb.mmtf.spark.data.Atom

Packages that use Atom

Package	Description
org.rcsb.mmtf.spark.data
org.rcsb.mmtf.spark.mappers

Uses of Atom in org.rcsb.mmtf.spark.data

Methods in org.rcsb.mmtf.spark.data that return Atom

Modifier and Type	Method	Description
Atom	Contact.getAtomOne()
Atom	Contact.getAtomTwo()

Methods in org.rcsb.mmtf.spark.data that return types with arguments of type Atom

Modifier and Type	Method	Description
java.util.List<Atom>	Group.getAtoms()
org.apache.spark.api.java.JavaRDD<Atom>	AtomDataset.getRdd()

Methods in org.rcsb.mmtf.spark.data with parameters of type Atom

Modifier and Type	Method	Description
void	Contact.setAtomOne(Atom atomOne)
void	Contact.setAtomTwo(Atom atomTwo)

Method parameters in org.rcsb.mmtf.spark.data with type arguments of type Atom

Modifier and Type	Method	Description
void	Group.setAtoms(java.util.List<Atom> atoms)
void	AtomDataset.setRdd(org.apache.spark.api.java.JavaRDD<Atom> rdd)

Constructor parameters in org.rcsb.mmtf.spark.data with type arguments of type Atom

Constructor	Description
AtomDataset(org.apache.spark.api.java.JavaRDD<Atom> inputRdd)	Public constructor from a JavaRDD of Atom
AtomDataset(org.apache.spark.api.java.JavaRDD<Atom> inputRdd, java.lang.String tableName)	Construct a table with a given table name.

Uses of Atom in org.rcsb.mmtf.spark.mappers

Methods in org.rcsb.mmtf.spark.mappers that return types with arguments of type Atom

Modifier and Type	Method	Description
java.util.Iterator<Atom>	MapToAtoms.call(org.rcsb.mmtf.api.StructureDataInterface structure)