Package org.rcsb.mmtf.spark.data

Class MmtfStructureData

  • public class MmtfStructureData
extends java.lang.Object
    Class to hold the undecoded MmtfStructure data. Useful for basic analysis.
    Author:
    Anthony Bradley

    • Constructor Summary

      Constructors 
      Constructor Description
      MmtfStructureData​(java.lang.String inputPath)
      Constructor from a file.
      MmtfStructureData​(org.apache.spark.api.java.JavaPairRDD<java.lang.String,​org.rcsb.mmtf.dataholders.MmtfStructure> inputRdd)
      Constructor from am RDD

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      org.apache.spark.api.java.JavaPairRDD<java.lang.String,​org.rcsb.mmtf.dataholders.MmtfStructure> getJavaPairRdd()  

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Constructor Detail

      • MmtfStructureData

        public MmtfStructureData​(java.lang.String inputPath)
        Constructor from a file.
        Parameters:
        inputPath - the input path of the Hadoop sequence file to read

      • MmtfStructureData

        public MmtfStructureData​(org.apache.spark.api.java.JavaPairRDD<java.lang.String,​org.rcsb.mmtf.dataholders.MmtfStructure> inputRdd)
        Constructor from am RDD
        Parameters:
        inputRdd - the input JavaPairRDD to use

    • Method Detail

      • getJavaPairRdd

        public org.apache.spark.api.java.JavaPairRDD<java.lang.String,​org.rcsb.mmtf.dataholders.MmtfStructure> getJavaPairRdd()
        Returns:
        the javaPairRdd