Index (canova-api 0.0.0.6 API)

A B C D E F G H I J K L M N O P R S T U V W X Y Z

A

able(Iterator<T>) - Static method in class org.canova.api.berkeley.Iterators: Wraps an iterator as an iterable
abs(double) - Static method in class org.canova.api.berkeley.SloppyMath
accept(T) - Method in interface org.canova.api.berkeley.Filter
accept(Class<?>) - Method in interface org.canova.api.io.serializers.Serialization: Allows clients to test whether this Serialization supports the given class.
add(E, double) - Method in class org.canova.api.berkeley.PriorityQueue
add(Object, int) - Method in class org.canova.api.util.Index
add(Object) - Method in class org.canova.api.util.Index
add(Pair<K, V>) - Method in class org.canova.api.util.MultiDimensionalSet: Adds the specified element to this applyTransformToDestination if it is not already present (optional operation).
add(K, V) - Method in class org.canova.api.util.MultiDimensionalSet
addAll(Collection<? extends Pair<K, V>>) - Method in class org.canova.api.util.MultiDimensionalSet: Adds all of the elements in the specified collection to this applyTransformToDestination if they're not already present (optional operation).
addDefaultResource(String) - Static method in class org.canova.api.conf.Configuration: Add a default resource.
addExp(float[], int) - Static method in class org.canova.api.berkeley.SloppyMath
addExp_Old(float[]) - Static method in class org.canova.api.berkeley.SloppyMath: Similar to logAdd, but without the final log.
addResource(String) - Method in class org.canova.api.conf.Configuration: Add a configuration resource.
addResource(URL) - Method in class org.canova.api.conf.Configuration: Add a configuration resource.
addResource(InputStream) - Method in class org.canova.api.conf.Configuration: Add a configuration resource.
adjustedrSquared(double, int, int) - Static method in class org.canova.api.util.MathUtils: This calculates the adjusted r^2 including degrees of freedom.
allMatches(String, String) - Static method in class org.canova.api.berkeley.StringUtils
append(byte[], int, int) - Method in class org.canova.api.io.data.Text: Append a range of bytes to the end of the given text
append(byte[], int, int) - Method in class org.canova.api.records.Buffer: Append specified bytes to the buffer.
append(byte[]) - Method in class org.canova.api.records.Buffer: Append specified bytes to the buffer
APPEND - Static variable in interface org.canova.api.records.writer.RecordWriter
APPEND_LABEL - Static variable in interface org.canova.api.records.reader.RecordReader
appendLabel - Variable in class org.canova.api.records.reader.impl.FileRecordReader
approxEquals(Counter<E>, double) - Method in class org.canova.api.berkeley.Counter
approxExp(double) - Static method in class org.canova.api.berkeley.SloppyMath
approxLog(double) - Static method in class org.canova.api.berkeley.SloppyMath
approxPow(double, double) - Static method in class org.canova.api.berkeley.SloppyMath
ArchiveUtils - Class in org.canova.api.util
ArchiveUtils() - Constructor for class org.canova.api.util.ArchiveUtils
argMax() - Method in class org.canova.api.berkeley.Counter: Finds the key with maximum count.
argMax() - Method in class org.canova.api.berkeley.CounterMap: Finds the key with maximum count.
argsToMap(String[]) - Static method in class org.canova.api.berkeley.StringUtils: Parses command line arguments into a Map.
argsToMap(String[], Map<String, Integer>) - Static method in class org.canova.api.berkeley.StringUtils: Parses command line arguments into a Map.
argsToProperties(String[]) - Static method in class org.canova.api.berkeley.StringUtils
argsToProperties(String[], Map) - Static method in class org.canova.api.berkeley.StringUtils: Analagous to StringUtils.argsToMap(java.lang.String[]).
arrayToString(String[]) - Static method in class org.canova.api.util.StringUtils: Given an array of strings, return a comma-separated list of its elements.
asCounter() - Method in class org.canova.api.berkeley.PriorityQueue: Returns a counter whose keys are the elements in this priority queue, and whose counts are the priorities in this queue.
asMinPriorityQueue() - Method in class org.canova.api.berkeley.Counter: Warning: all priorities are the negative of their counts in the counter here
asPriorityQueue() - Method in class org.canova.api.berkeley.Counter: Builds a priority queue whose elements are the counter's elements, and whose priorities are those elements' counts in the counter.

B

BaseInputFormat - Class in org.canova.api.formats.input
BaseInputFormat() - Constructor for class org.canova.api.formats.input.BaseInputFormat
BaseInputSplit - Class in org.canova.api.split: Base input split
BaseInputSplit() - Constructor for class org.canova.api.split.BaseInputSplit
bernoullis(double, double, double) - Static method in class org.canova.api.util.MathUtils: This will return the bernoulli trial for the given event.
BinaryComparable - Class in org.canova.api.io: Interface supported by org.apache.hadoop.io.WritableComparable types supporting ordering/permutation by a representative set of bytes.
BinaryComparable() - Constructor for class org.canova.api.io.BinaryComparable
binomial(RandomGenerator, int, double) - Static method in class org.canova.api.util.MathUtils: Generates a binomial distributed number using the given rng
BooleanWritable - Class in org.canova.api.io.data: A WritableComparable for booleans.
BooleanWritable() - Constructor for class org.canova.api.io.data.BooleanWritable
BooleanWritable(boolean) - Constructor for class org.canova.api.io.data.BooleanWritable
BooleanWritable.Comparator - Class in org.canova.api.io.data: A Comparator optimized for BooleanWritable.
Buffer - Class in org.canova.api.records: A byte sequence that is used as a Java native type for buffer.
Buffer() - Constructor for class org.canova.api.records.Buffer: Create a zero-count sequence.
Buffer(byte[]) - Constructor for class org.canova.api.records.Buffer: Create a Buffer using the byte array as the initial value.
Buffer(byte[], int, int) - Constructor for class org.canova.api.records.Buffer: Create a Buffer using the byte range as the initial value.
buildCounter(MapFactory<V, Double>) - Method in class org.canova.api.berkeley.CounterMap
buildMap() - Method in class org.canova.api.berkeley.MapFactory
buildMap() - Method in class org.canova.api.berkeley.MapFactory.HashMapFactory
buildMap() - Method in class org.canova.api.berkeley.MapFactory.IdentityHashMapFactory
buildMap() - Method in class org.canova.api.berkeley.MapFactory.TreeMapFactory
buildMap() - Method in class org.canova.api.berkeley.MapFactory.WeakHashMapFactory
byteDesc(long) - Static method in class org.canova.api.util.StringUtils: Return an abbreviated English-language desc of the byte length
bytesToCodePoint(ByteBuffer) - Static method in class org.canova.api.io.data.Text: Returns the next code point at the current position in the buffer.
byteToHexString(byte[], int, int) - Static method in class org.canova.api.util.StringUtils: Given an array of bytes it will convert the bytes to a hex string representation of the bytes
byteToHexString(byte[]) - Static method in class org.canova.api.util.StringUtils: Same as byteToHexString(bytes, 0, bytes.length).
ByteWritable - Class in org.canova.api.io.data: A WritableComparable for a single byte.
ByteWritable() - Constructor for class org.canova.api.io.data.ByteWritable
ByteWritable(byte) - Constructor for class org.canova.api.io.data.ByteWritable
ByteWritable.Comparator - Class in org.canova.api.io.data: A Comparator optimized for ByteWritable.

C

call(I) - Method in interface org.canova.api.berkeley.MyMethod
CanovaException - Exception in org.canova.api.exceptions: Canova exception
CanovaException() - Constructor for exception org.canova.api.exceptions.CanovaException
CanovaException(String) - Constructor for exception org.canova.api.exceptions.CanovaException
CanovaException(String, Throwable) - Constructor for exception org.canova.api.exceptions.CanovaException
CanovaException(Throwable) - Constructor for exception org.canova.api.exceptions.CanovaException
CanovaException(String, Throwable, boolean, boolean) - Constructor for exception org.canova.api.exceptions.CanovaException
capitalize(String) - Static method in class org.canova.api.berkeley.StringUtils: Uppercases the first character of a string.
charAt(int) - Method in class org.canova.api.io.data.Text: Returns the Unicode Scalar Value (32-bit integer value) for the character at position.
chiSquare2by2(int, int, int, int) - Static method in class org.canova.api.berkeley.SloppyMath: Find a 2x2 chi-square value.
clamp(int, int, int) - Static method in class org.canova.api.util.MathUtils: Clamps the value to a discrete value
CLASSIFICATION - Static variable in interface org.canova.api.records.reader.LibSvm
clear() - Method in class org.canova.api.berkeley.Counter
clear() - Method in class org.canova.api.conf.Configuration: Clears all keys from the configuration.
clear() - Method in class org.canova.api.io.data.Text: Clear the string to empty.
clear() - Method in class org.canova.api.util.MultiDimensionalMap: Removes all of the mappings from this map (optional operation).
clear() - Method in class org.canova.api.util.MultiDimensionalSet: Removes all of the elements from this applyTransformToDestination (optional operation).
clone() - Method in class org.canova.api.berkeley.PriorityQueue: Returns a clone of this priority queue.
clone(T, Configuration) - Static method in class org.canova.api.io.WritableUtils: Make a copy of a writable object using serialization to a buffer.
clone() - Method in class org.canova.api.records.Buffer
cloneWritableInto(Writable, Writable) - Static method in class org.canova.api.util.ReflectionUtils: Deprecated.
close() - Method in interface org.canova.api.io.serializers.Deserializer: Close the underlying input stream and clear up any resources.
close() - Method in interface org.canova.api.io.serializers.Serializer: Close the underlying output stream and clear up any resources.
close() - Method in class org.canova.api.records.reader.impl.CollectionRecordReader
close() - Method in class org.canova.api.records.reader.impl.ComposableRecordReader
close() - Method in class org.canova.api.records.reader.impl.FileRecordReader
close() - Method in class org.canova.api.records.reader.impl.LibSvmRecordReader
close() - Method in class org.canova.api.records.reader.impl.LineRecordReader
close() - Method in class org.canova.api.records.writer.impl.FileRecordWriter
close() - Method in interface org.canova.api.records.writer.RecordWriter: Close the recod reader
CollectionRecordReader - Class in org.canova.api.records.reader.impl: Collection record reader.
CollectionRecordReader(Collection<? extends Collection<Writable>>) - Constructor for class org.canova.api.records.reader.impl.CollectionRecordReader
combination(double, double) - Static method in class org.canova.api.util.MathUtils: This returns the combination of n choose r
COMMA - Static variable in class org.canova.api.util.StringUtils
Comparator() - Constructor for class org.canova.api.io.data.BooleanWritable.Comparator
Comparator() - Constructor for class org.canova.api.io.data.ByteWritable.Comparator
Comparator() - Constructor for class org.canova.api.io.data.DoubleWritable.Comparator
Comparator() - Constructor for class org.canova.api.io.data.FloatWritable.Comparator
Comparator() - Constructor for class org.canova.api.io.data.IntWritable.Comparator
Comparator() - Constructor for class org.canova.api.io.data.LongWritable.Comparator
Comparator() - Constructor for class org.canova.api.io.data.Text.Comparator
compare(Pair<F, S>, Pair<F, S>) - Method in class org.canova.api.berkeley.Pair.DefaultLexicographicPairComparator
compare(Pair<S, T>, Pair<S, T>) - Method in class org.canova.api.berkeley.Pair.FirstComparator
compare(Pair<F, S>, Pair<F, S>) - Method in class org.canova.api.berkeley.Pair.LexicographicPairComparator
compare(Pair<S, T>, Pair<S, T>) - Method in class org.canova.api.berkeley.Pair.ReverseFirstComparator
compare(Pair<S, T>, Pair<S, T>) - Method in class org.canova.api.berkeley.Pair.ReverseSecondComparator
compare(Pair<S, T>, Pair<S, T>) - Method in class org.canova.api.berkeley.Pair.SecondComparator
compare(byte[], int, int, byte[], int, int) - Method in class org.canova.api.io.data.BooleanWritable.Comparator
compare(byte[], int, int, byte[], int, int) - Method in class org.canova.api.io.data.ByteWritable.Comparator
compare(byte[], int, int, byte[], int, int) - Method in class org.canova.api.io.data.DoubleWritable.Comparator
compare(byte[], int, int, byte[], int, int) - Method in class org.canova.api.io.data.FloatWritable.Comparator
compare(byte[], int, int, byte[], int, int) - Method in class org.canova.api.io.data.IntWritable.Comparator
compare(byte[], int, int, byte[], int, int) - Method in class org.canova.api.io.data.LongWritable.Comparator
compare(WritableComparable, WritableComparable) - Method in class org.canova.api.io.data.LongWritable.DecreasingComparator
compare(byte[], int, int, byte[], int, int) - Method in class org.canova.api.io.data.LongWritable.DecreasingComparator
compare(byte[], int, int, byte[], int, int) - Method in class org.canova.api.io.data.Text.Comparator
compare(byte[], int, int, byte[], int, int) - Method in interface org.canova.api.io.RawComparator
compare(byte[], int, int, byte[], int, int) - Method in class org.canova.api.io.WritableComparator: Optimization hook.
compare(WritableComparable, WritableComparable) - Method in class org.canova.api.io.WritableComparator: Compare two WritableComparables.
compare(Object, Object) - Method in class org.canova.api.io.WritableComparator
compareBytes(byte[], int, int, byte[], int, int) - Static method in class org.canova.api.io.WritableComparator: Lexicographic order of binary data.
compareBytes(byte[], int, int, byte[], int, int) - Static method in class org.canova.api.records.Utils: Lexicographic order of binary data.
compareTo(Pair<F, S>) - Method in class org.canova.api.berkeley.Pair: Compares this object with the specified object for order.
compareTo(BinaryComparable) - Method in class org.canova.api.io.BinaryComparable: Compare bytes from {#getBytes()}.
compareTo(byte[], int, int) - Method in class org.canova.api.io.BinaryComparable: Compare bytes from {#getBytes()} to those provided.
compareTo(Object) - Method in class org.canova.api.io.data.BooleanWritable
compareTo(Object) - Method in class org.canova.api.io.data.ByteWritable: Compares two ByteWritables.
compareTo(Object) - Method in class org.canova.api.io.data.DoubleWritable
compareTo(Object) - Method in class org.canova.api.io.data.FloatWritable: Compares two FloatWritables.
compareTo(Object) - Method in class org.canova.api.io.data.IntWritable: Compares two IntWritables.
compareTo(Object) - Method in class org.canova.api.io.data.LongWritable: Compares two LongWritables.
compareTo(Object) - Method in class org.canova.api.records.Buffer: Define the sort order of the Buffer.
ComposableRecordReader - Class in org.canova.api.records.reader.impl: RecordReader for each pipeline.
ComposableRecordReader(RecordReader...) - Constructor for class org.canova.api.records.reader.impl.ComposableRecordReader
concat(Iterable<Iterator<? extends T>>) - Static method in class org.canova.api.berkeley.Iterators
concat(Iterator<? extends T>...) - Static method in class org.canova.api.berkeley.Iterators
concat(Iterable<T>, Iterable<T>) - Static method in class org.canova.api.berkeley.Iterators
concurrentSkipListSet() - Static method in class org.canova.api.util.MultiDimensionalSet
conf - Variable in class org.canova.api.records.reader.impl.FileRecordReader
conf - Variable in class org.canova.api.records.reader.impl.LineRecordReader
conf - Variable in class org.canova.api.records.writer.impl.FileRecordWriter
Configurable - Interface in org.canova.api.conf: Something that may be configured with a Configuration.
Configuration - Class in org.canova.api.conf: Provides access to configuration parameters.
Configuration() - Constructor for class org.canova.api.conf.Configuration: A new configuration.
Configuration(boolean) - Constructor for class org.canova.api.conf.Configuration: A new configuration where the behavior of reading from the default resources can be turned off.
Configuration(Configuration) - Constructor for class org.canova.api.conf.Configuration: A new configuration with the same settings cloned from another.
Configuration.IntegerRanges - Class in org.canova.api.conf: A class that represents a set of positive integer ranges.
Configured - Class in org.canova.api.conf: Base class for things that may be configured with a Configuration.
Configured() - Constructor for class org.canova.api.conf.Configured: Construct a Configured.
Configured(Configuration) - Constructor for class org.canova.api.conf.Configured: Construct a Configured.
contains(K, T) - Method in class org.canova.api.util.MultiDimensionalMap
contains(Object) - Method in class org.canova.api.util.MultiDimensionalSet: Returns true if this applyTransformToDestination contains the specified element.
contains(K, V) - Method in class org.canova.api.util.MultiDimensionalSet
containsAll(Collection<?>) - Method in class org.canova.api.util.MultiDimensionalSet: Returns true if this applyTransformToDestination contains all of the elements of the specified collection.
containsKey(E) - Method in class org.canova.api.berkeley.Counter: Returns whether the counter contains the given key.
containsKey(K) - Method in class org.canova.api.berkeley.CounterMap
containsKey(Object) - Method in class org.canova.api.util.MultiDimensionalMap: Returns true if this map contains a mapping for the specified key.
containsValue(Object) - Method in class org.canova.api.util.MultiDimensionalMap: Returns true if this map maps one or more keys to the specified value.
convert(Writable) - Method in class org.canova.api.io.converters.DoubleWritableConverter
convert(Writable) - Method in class org.canova.api.io.converters.FloatWritableConverter
convert(Writable) - Method in class org.canova.api.io.converters.LabelWriterConverter
convert(Writable) - Method in class org.canova.api.io.converters.SelfWritableConverter
convert(Writable) - Method in interface org.canova.api.io.WritableConverter: Convert a writable to another kind of writable
coordSplit(double[]) - Static method in class org.canova.api.util.MathUtils: This returns the coordinate split in a list of coordinates such that the values for ret[0] are the x values and ret[1] are the y values
coordSplit(List<Double>) - Static method in class org.canova.api.util.MathUtils: This returns the coordinate split in a list of coordinates such that the values for ret[0] are the x values and ret[1] are the y values
copy(byte[], int, int) - Method in class org.canova.api.records.Buffer: Copy the specified byte array to the Buffer.
copy(Configuration, T, T) - Static method in class org.canova.api.util.ReflectionUtils: Make a copy of the writable object using serialization to a buffer
correlation(double[], double[]) - Static method in class org.canova.api.util.MathUtils: Returns the correlation coefficient of two double vectors.
Counter<E> - Class in org.canova.api.berkeley: A map from objects to doubles.
Counter() - Constructor for class org.canova.api.berkeley.Counter
Counter(boolean) - Constructor for class org.canova.api.berkeley.Counter
Counter(MapFactory<E, Double>) - Constructor for class org.canova.api.berkeley.Counter
Counter(Map<? extends E, Double>) - Constructor for class org.canova.api.berkeley.Counter
Counter(Counter<? extends E>) - Constructor for class org.canova.api.berkeley.Counter
Counter(Collection<? extends E>) - Constructor for class org.canova.api.berkeley.Counter
CounterMap<K,V> - Class in org.canova.api.berkeley: Maintains counts of (key, value) pairs.
CounterMap(CounterMap<K, V>) - Constructor for class org.canova.api.berkeley.CounterMap
CounterMap() - Constructor for class org.canova.api.berkeley.CounterMap
CounterMap(MapFactory<K, Counter<V>>, MapFactory<V, Double>) - Constructor for class org.canova.api.berkeley.CounterMap
CounterMap(boolean) - Constructor for class org.canova.api.berkeley.CounterMap
create(URI) - Method in interface org.canova.api.records.reader.factory.RecordReaderFactory: Creates instance of RecordReader
create(URI) - Method in interface org.canova.api.records.reader.factory.RecordWriterFactory
createReader(InputSplit) - Method in class org.canova.api.formats.input.BaseInputFormat
createReader(InputSplit, Configuration) - Method in class org.canova.api.formats.input.impl.CSVInputFormat
createReader(InputSplit) - Method in class org.canova.api.formats.input.impl.CSVInputFormat
createReader(InputSplit, Configuration) - Method in class org.canova.api.formats.input.impl.LibSvmInputFormat
createReader(InputSplit, Configuration) - Method in class org.canova.api.formats.input.impl.LineInputFormat
createReader(InputSplit) - Method in class org.canova.api.formats.input.impl.LineInputFormat
createReader(InputSplit, Configuration) - Method in class org.canova.api.formats.input.impl.MatlabInputFormat
createReader(InputSplit) - Method in class org.canova.api.formats.input.impl.MatlabInputFormat
createReader(InputSplit, Configuration) - Method in class org.canova.api.formats.input.impl.SVMLightInputFormat
createReader(InputSplit) - Method in class org.canova.api.formats.input.impl.SVMLightInputFormat
createReader(InputSplit, Configuration) - Method in interface org.canova.api.formats.input.InputFormat: Creates a reader from an input split
createReader(InputSplit) - Method in interface org.canova.api.formats.input.InputFormat: Creates a reader from an input split
createVector(Object[]) - Method in interface org.canova.api.vector.Vectorizer: Create a vector based on the given arguments
createWriter(Configuration) - Method in class org.canova.api.formats.output.impl.CSVOutputFormat
createWriter(Configuration) - Method in class org.canova.api.formats.output.impl.LibSvmOutputFormat
createWriter(Configuration) - Method in class org.canova.api.formats.output.impl.LineOutputFormat
createWriter(Configuration) - Method in class org.canova.api.formats.output.impl.SVMLightOutputFormat
createWriter(Configuration) - Method in interface org.canova.api.formats.output.OutputFormat: Create a record writer
CSVInputFormat - Class in org.canova.api.formats.input.impl: Line input format creates an @link{LineRecordReader}
CSVInputFormat() - Constructor for class org.canova.api.formats.input.impl.CSVInputFormat
CSVOutputFormat - Class in org.canova.api.formats.output.impl: Creates an @link{CSVRecordWriter}
CSVOutputFormat() - Constructor for class org.canova.api.formats.output.impl.CSVOutputFormat
CSVRecordReader - Class in org.canova.api.records.reader.impl: Simple csv record reader.
CSVRecordReader(int) - Constructor for class org.canova.api.records.reader.impl.CSVRecordReader: Skip first n lines
CSVRecordReader(int, String) - Constructor for class org.canova.api.records.reader.impl.CSVRecordReader: Skip lines and use delimiter
CSVRecordReader() - Constructor for class org.canova.api.records.reader.impl.CSVRecordReader
CSVRecordWriter - Class in org.canova.api.records.writer.impl: Csv record writer
CSVRecordWriter() - Constructor for class org.canova.api.records.writer.impl.CSVRecordWriter
CSVRecordWriter(File) - Constructor for class org.canova.api.records.writer.impl.CSVRecordWriter
CSVRecordWriter(File, boolean) - Constructor for class org.canova.api.records.writer.impl.CSVRecordWriter
CSVRecordWriter(Configuration) - Constructor for class org.canova.api.records.writer.impl.CSVRecordWriter
currentFile - Variable in class org.canova.api.records.reader.impl.FileRecordReader

D

DataInputBuffer - Class in org.canova.api.io: A reusable DataInput implementation that reads from an in-memory buffer.
DataInputBuffer() - Constructor for class org.canova.api.io.DataInputBuffer: Constructs a new empty buffer.
DataOutputBuffer - Class in org.canova.api.io: A reusable DataOutput implementation that writes to an in-memory buffer.
DataOutputBuffer() - Constructor for class org.canova.api.io.DataOutputBuffer: Constructs a new empty buffer.
DataOutputBuffer(int) - Constructor for class org.canova.api.io.DataOutputBuffer
decode(byte[]) - Static method in class org.canova.api.io.data.Text: Converts the provided byte array to a String using the UTF-8 encoding.
decode(byte[], int, int) - Static method in class org.canova.api.io.data.Text
decode(byte[], int, int, boolean) - Static method in class org.canova.api.io.data.Text: Converts the provided byte array to a String using the UTF-8 encoding.
decodeVIntSize(byte) - Static method in class org.canova.api.io.WritableUtils: Parse the first byte of a vint/vlong to determine the number of bytes
DecreasingComparator() - Constructor for class org.canova.api.io.data.LongWritable.DecreasingComparator
DefaultFactory(Class) - Constructor for class org.canova.api.berkeley.Factory.DefaultFactory
DefaultLexicographicPairComparator() - Constructor for class org.canova.api.berkeley.Pair.DefaultLexicographicPairComparator
define(Class, WritableComparator) - Static method in class org.canova.api.io.WritableComparator: Register an optimized comparator for a WritableComparable implementation.
DELIMITER - Static variable in class org.canova.api.records.reader.impl.CSVRecordReader
deserialize(T) - Method in interface org.canova.api.io.serializers.Deserializer: Deserialize the next object from the underlying input stream.
Deserializer<T> - Interface in org.canova.api.io.serializers: Provides a facility for deserializing objects of type from an InputStream.
determinationCoefficient(double[], double[], int) - Static method in class org.canova.api.util.MathUtils: This returns the determination coefficient of two vectors given a length
difference(Counter<E>) - Method in class org.canova.api.berkeley.Counter
difference(Collection<? extends T>, Collection<? extends T>) - Static method in class org.canova.api.util.SetUtils: Return is s1 \ s2
discretize(double, double, double, int) - Static method in class org.canova.api.util.MathUtils: Discretize the given value
displayByteArray(byte[]) - Static method in class org.canova.api.io.WritableUtils
distanceFinderZValue(double[]) - Static method in class org.canova.api.util.MathUtils: This will translate a vector in to an equivalent integer
doInitialize(InputSplit) - Method in class org.canova.api.records.reader.impl.FileRecordReader
done() - Method in interface org.canova.api.records.Index
dotProduct(Counter<E>) - Method in class org.canova.api.berkeley.Counter
DoubleWritable - Class in org.canova.api.io.data: Writable for Double values.
DoubleWritable() - Constructor for class org.canova.api.io.data.DoubleWritable
DoubleWritable(double) - Constructor for class org.canova.api.io.data.DoubleWritable
DoubleWritable.Comparator - Class in org.canova.api.io.data: A Comparator optimized for DoubleWritable.
DoubleWritableConverter - Class in org.canova.api.io.converters: Convert a writable to a double
DoubleWritableConverter() - Constructor for class org.canova.api.io.converters.DoubleWritableConverter
dumpConfiguration(Configuration, Writer) - Static method in class org.canova.api.conf.Configuration: Writes out all the parameters and their properties (final and resource) to the given Writer The format of the output would be { "properties" : [ {key1,value1,key1.isFinal,key1.resource}, {key2,value2, key2.isFinal,key2.resource}...

E

editDistance(String, String) - Static method in class org.canova.api.berkeley.StringUtils: Computes the Levenshtein (edit) distance of the two given Strings.
emptyIterator() - Static method in class org.canova.api.berkeley.Iterators
emptyStringArray - Static variable in class org.canova.api.util.StringUtils
encode(String) - Static method in class org.canova.api.io.data.Text: Converts the provided String to bytes using the UTF-8 encoding.
encode(String, boolean) - Static method in class org.canova.api.io.data.Text: Converts the provided String to bytes using the UTF-8 encoding.
ensureCounter(K) - Method in class org.canova.api.berkeley.CounterMap
entropy(double[]) - Static method in class org.canova.api.util.MathUtils: This returns the entropy (information gain, or uncertainty of a random variable).
Entry(K, T, V) - Constructor for class org.canova.api.util.MultiDimensionalMap.Entry
entrySet() - Method in class org.canova.api.berkeley.Counter
entrySet() - Method in class org.canova.api.util.MultiDimensionalMap: Returns a Set view of the mappings contained in this map.
equals(Object) - Method in class org.canova.api.berkeley.Pair
equals(Object) - Method in class org.canova.api.berkeley.Triple
equals(Object) - Method in class org.canova.api.io.BinaryComparable: Return true if bytes from {#getBytes()} match.
equals(Object) - Method in class org.canova.api.io.data.BooleanWritable
equals(Object) - Method in class org.canova.api.io.data.ByteWritable: Returns true iff o is a ByteWritable with the same value.
equals(Object) - Method in class org.canova.api.io.data.DoubleWritable: Returns true iff o is a DoubleWritable with the same value.
equals(Object) - Method in class org.canova.api.io.data.FloatWritable: Returns true iff o is a FloatWritable with the same value.
equals(Object) - Method in class org.canova.api.io.data.IntWritable: Returns true iff o is a IntWritable with the same value.
equals(Object) - Method in class org.canova.api.io.data.LongWritable: Returns true iff o is a LongWritable with the same value.
equals(Object) - Method in class org.canova.api.io.data.Text: Returns true iff o is a Text with the same contents.
equals(Object) - Method in class org.canova.api.records.Buffer
equals(Object) - Method in class org.canova.api.util.MultiDimensionalMap
errorFor(double, double) - Static method in class org.canova.api.util.MathUtils
ESCAPE_CHAR - Static variable in class org.canova.api.util.StringUtils
escapeHTML(String) - Static method in class org.canova.api.util.StringUtils: Escapes HTML Special characters present in the string.
escapeString(String, char[], char) - Static method in class org.canova.api.berkeley.StringUtils
escapeString(String) - Static method in class org.canova.api.util.StringUtils: Escape commas in the string using the default escape char
escapeString(String, char, char) - Static method in class org.canova.api.util.StringUtils: Escape charToEscape in the string with the escape char escapeChar
escapeString(String, char, char[]) - Static method in class org.canova.api.util.StringUtils
euclideanDistance(double[], double[]) - Static method in class org.canova.api.util.MathUtils: This returns the euclidean distance of two vectors sum(i=1,n) (q_i - p_i)^2
euclideanDistance(float[], float[]) - Static method in class org.canova.api.util.MathUtils: This returns the euclidean distance of two vectors sum(i=1,n) (q_i - p_i)^2
exactBinomial(int, int, double) - Static method in class org.canova.api.berkeley.SloppyMath: Find a one tailed exact binomial test probability.
exp(double) - Static method in class org.canova.api.berkeley.SloppyMath

F

factorial(double) - Static method in class org.canova.api.util.MathUtils: This will return the factorial of the given number n.
Factory<T> - Interface in org.canova.api.berkeley
Factory.DefaultFactory<T> - Class in org.canova.api.berkeley
fileNameClean(String) - Static method in class org.canova.api.berkeley.StringUtils: Returns a "clean" version of the given filename in which spaces have been converted to dashes and all non-alphaneumeric chars are underscores.
FileRecordReader - Class in org.canova.api.records.reader.impl: File reader/writer
FileRecordReader() - Constructor for class org.canova.api.records.reader.impl.FileRecordReader
FileRecordWriter - Class in org.canova.api.records.writer.impl: Write to files.
FileRecordWriter() - Constructor for class org.canova.api.records.writer.impl.FileRecordWriter
FileRecordWriter(File) - Constructor for class org.canova.api.records.writer.impl.FileRecordWriter
FileRecordWriter(File, boolean) - Constructor for class org.canova.api.records.writer.impl.FileRecordWriter
FileRecordWriter(Configuration) - Constructor for class org.canova.api.records.writer.impl.FileRecordWriter: Initialized based on configuration Set the following attributes in the conf:
FileSplit - Class in org.canova.api.split: File input split.
FileSplit(File) - Constructor for class org.canova.api.split.FileSplit
fillList(Iterator<? extends T>, List<T>) - Static method in class org.canova.api.berkeley.Iterators
fillList(Iterator<? extends T>) - Static method in class org.canova.api.berkeley.Iterators
Filter<T> - Interface in org.canova.api.berkeley: Filters are boolean functions which accept or reject items.
filter(Iterator<T>, Filter<T>) - Static method in class org.canova.api.berkeley.Iterators
FilteredIterator(Filter<T>, Iterator<T>) - Constructor for class org.canova.api.berkeley.Iterators.FilteredIterator
FilteredIterator(Filter<T>, Iterable<T>) - Constructor for class org.canova.api.berkeley.Iterators.FilteredIterator
find(String, String) - Static method in class org.canova.api.berkeley.StringUtils: Say whether this regular expression can be found inside this String.
find(String) - Method in class org.canova.api.io.data.Text
find(String, int) - Method in class org.canova.api.io.data.Text: Finds any occurence of what in the backing buffer, starting as position start.
findNext(String, char, char, int, StringBuilder) - Static method in class org.canova.api.util.StringUtils: Finds the first occurrence of the separator character ignoring the escaped separators starting from the index.
FirstComparator() - Constructor for class org.canova.api.berkeley.Pair.FirstComparator
fit(RecordReader) - Method in interface org.canova.api.vector.Vectorizer: Fit based on a record reader
fit(RecordReader, Vectorizer.RecordCallBack) - Method in interface org.canova.api.vector.Vectorizer: Fit based on a record reader
fitTransform(RecordReader) - Method in interface org.canova.api.vector.Vectorizer: Fit based on a record reader
fitTransform(RecordReader, Vectorizer.RecordCallBack) - Method in interface org.canova.api.vector.Vectorizer: Fit based on a record reader
FloatWritable - Class in org.canova.api.io.data: A WritableComparable for floats.
FloatWritable() - Constructor for class org.canova.api.io.data.FloatWritable
FloatWritable(float) - Constructor for class org.canova.api.io.data.FloatWritable
FloatWritable.Comparator - Class in org.canova.api.io.data: A Comparator optimized for FloatWritable.
FloatWritableConverter - Class in org.canova.api.io.converters: Convert a writable to a double
FloatWritableConverter() - Constructor for class org.canova.api.io.converters.FloatWritableConverter
formatPercent(double, int) - Static method in class org.canova.api.util.StringUtils: Format a percentage for presentation to the user.
formatTime(long) - Static method in class org.canova.api.util.StringUtils: Given the time in long milliseconds, returns a String in the format Xhrs, Ymins, Z sec.
formatTimeDiff(long, long) - Static method in class org.canova.api.util.StringUtils: Given a finish and start time in long milliseconds, returns a String in the format Xhrs, Ymins, Z sec, for the time difference between two times.
fromString(String, String) - Static method in class org.canova.api.util.MathUtils: This will take a given string and separator and convert it to an equivalent double array.

G

generateUniform(int) - Static method in class org.canova.api.util.MathUtils: This will generate a series of uniformally distributed numbers between l times
get(String) - Method in class org.canova.api.conf.Configuration: Get the value of the name property, null if no such property exists.
get(String, String) - Method in class org.canova.api.conf.Configuration: Get the value of the name property.
get() - Method in class org.canova.api.io.data.BooleanWritable: Returns the value of the BooleanWritable
get() - Method in class org.canova.api.io.data.ByteWritable: Return the value of this ByteWritable.
get() - Method in class org.canova.api.io.data.DoubleWritable
get() - Method in class org.canova.api.io.data.FloatWritable: Return the value of this FloatWritable.
get() - Method in class org.canova.api.io.data.IntWritable: Return the value of this IntWritable.
get() - Method in class org.canova.api.io.data.LongWritable: Return the value of this LongWritable.
get(Class<? extends WritableComparable>) - Static method in class org.canova.api.io.WritableComparator: Get a comparator for a WritableComparable implementation.
get() - Method in class org.canova.api.records.Buffer: Get the data from the Buffer.
get(int) - Method in class org.canova.api.util.Index
get(Object) - Method in class org.canova.api.util.MultiDimensionalMap: Returns the value to which the specified key is mapped, or null if this map contains no mapping for the key.
get(K, T) - Method in class org.canova.api.util.MultiDimensionalMap
getBoolean(String, boolean) - Method in class org.canova.api.conf.Configuration: Get the value of the name property as a boolean.
getBytes() - Method in class org.canova.api.io.BinaryComparable: Return representative byte array for this instance.
getBytes() - Method in class org.canova.api.io.data.Text: Returns the raw bytes; however, only data up to Text.getLength() is valid.
getCapacity() - Method in class org.canova.api.records.Buffer: Get the capacity, which is the maximum count that could handled without resizing the backing storage.
getClass(String, Class<?>) - Method in class org.canova.api.conf.Configuration: Get the value of the name property as a Class.
getClass(String, Class<? extends U>, Class<U>) - Method in class org.canova.api.conf.Configuration: Get the value of the name property as a Class implementing the interface specified by xface.
getClass(T) - Static method in class org.canova.api.util.ReflectionUtils: Return the correctly-typed Class of the given object.
getClassByName(String) - Method in class org.canova.api.conf.Configuration: Load a class by name.
getClasses(String, Class<?>...) - Method in class org.canova.api.conf.Configuration: Get the value of the name property as an array of Class.
getClassLoader() - Method in class org.canova.api.conf.Configuration: Get the ClassLoader for this job.
getConf() - Method in interface org.canova.api.conf.Configurable: Return the configuration used by this object.
getConf() - Method in class org.canova.api.conf.Configured
getConf() - Method in class org.canova.api.records.reader.impl.CollectionRecordReader
getConf() - Method in class org.canova.api.records.reader.impl.ComposableRecordReader
getConf() - Method in class org.canova.api.records.reader.impl.FileRecordReader
getConf() - Method in class org.canova.api.records.reader.impl.LibSvmRecordReader
getConf() - Method in class org.canova.api.records.reader.impl.LineRecordReader
getConf() - Method in class org.canova.api.records.writer.impl.FileRecordWriter
getConfResourceAsInputStream(String) - Method in class org.canova.api.conf.Configuration: Get an input stream attached to the configuration resource with the given name.
getConfResourceAsReader(String) - Method in class org.canova.api.conf.Configuration: Get a Reader attached to the configuration resource with the given name.
getCount(E) - Method in class org.canova.api.berkeley.Counter: Get the count of the element, or zero if the element is not in the counter.
getCount(K, V) - Method in class org.canova.api.berkeley.CounterMap: Gets the count of the given (key, value) entry, or zero if that entry is not present.
getCount(K) - Method in class org.canova.api.berkeley.CounterMap: Gets the total count of the given key, or zero if that key is not present.
getCount() - Method in class org.canova.api.records.Buffer: Get the current count of the buffer.
getCounter(K) - Method in class org.canova.api.berkeley.CounterMap: Gets the sub-counter for the given key.
getCounters() - Method in class org.canova.api.berkeley.CounterMap
getCurrentLabel() - Method in class org.canova.api.records.reader.impl.FileRecordReader: Return the current label.
getData() - Method in class org.canova.api.io.DataInputBuffer
getData() - Method in class org.canova.api.io.DataOutputBuffer: Returns the current contents of the buffer.
getData() - Method in class org.canova.api.split.StringSplit
getDeflt() - Method in class org.canova.api.berkeley.Counter
getDeserializer(Class<T>) - Method in interface org.canova.api.io.serializers.Serialization
getDeserializer(Class<T>) - Method in class org.canova.api.io.serializers.SerializationFactory
getEntrySet() - Method in class org.canova.api.berkeley.Counter
getEntrySet() - Method in class org.canova.api.berkeley.CounterMap
getFile(String, String) - Method in class org.canova.api.conf.Configuration: Get a local file name under a directory named in dirsProp with the given path.
getFirst() - Method in class org.canova.api.berkeley.Pair
getFirst() - Method in class org.canova.api.berkeley.Triple
getFirstKey() - Method in class org.canova.api.util.MultiDimensionalMap.Entry
getFloat(String, float) - Method in class org.canova.api.conf.Configuration: Get the value of the name property as a float.
getFormattedTimeWithDiff(DateFormat, long, long) - Static method in class org.canova.api.util.StringUtils: Formats time in ms and appends difference (finishTime - startTime) as returned by formatTimeDiff().
getHostname() - Static method in class org.canova.api.util.StringUtils: Return hostname without throwing exception.
getInstances(String, Class<U>) - Method in class org.canova.api.conf.Configuration: Get the value of the name property as a List of objects implementing the interface specified by xface.
getInt(String, int) - Method in class org.canova.api.conf.Configuration: Get the value of the name property as an int.
getIs() - Method in class org.canova.api.split.InputStreamInputSplit
getKey() - Method in class org.canova.api.util.MultiDimensionalMap.Entry: Returns the key corresponding to this entry.
getKeyClass() - Method in class org.canova.api.io.WritableComparator: Returns the WritableComparable implementation class.
getLabels() - Method in class org.canova.api.records.reader.impl.FileRecordReader
getLength() - Method in class org.canova.api.io.BinaryComparable: Return n st bytes 0..n-1 from {#getBytes()} are valid.
getLength() - Method in class org.canova.api.io.data.Text: Returns the number of bytes in the byte array
getLength() - Method in class org.canova.api.io.DataInputBuffer: Returns the length of the input.
getLength() - Method in class org.canova.api.io.DataOutputBuffer: Returns the length of the valid data currently in the buffer.
getLong(String, long) - Method in class org.canova.api.conf.Configuration: Get the value of the name property as a long.
getPairIterator() - Method in class org.canova.api.berkeley.CounterMap
getPattern(String, Pattern) - Method in class org.canova.api.conf.Configuration: Get the value of the name property as a Pattern.
getPosition() - Method in class org.canova.api.io.DataInputBuffer: Returns the current position in the input.
getPriority() - Method in class org.canova.api.berkeley.PriorityQueue
getPriority() - Method in interface org.canova.api.berkeley.PriorityQueueInterface: Gets the priority of the highest-priority element of the queue.
getProbability(E) - Method in class org.canova.api.berkeley.Counter: I know, I know, this should be wrapped in a Distribution class, but it's such a common use...why not.
getRange(String, String) - Method in class org.canova.api.conf.Configuration: Parse the given attribute as a set of integer ranges
getRaw(String) - Method in class org.canova.api.conf.Configuration: Get the value of the name property, without doing variable expansion.
getResource(String) - Method in class org.canova.api.conf.Configuration: Get the URL for the named resource.
getSecond() - Method in class org.canova.api.berkeley.Pair
getSecond() - Method in class org.canova.api.berkeley.Triple
getSecondKey() - Method in class org.canova.api.util.MultiDimensionalMap.Entry
getSerialization(Class<T>) - Method in class org.canova.api.io.serializers.SerializationFactory
getSerializer(Class<T>) - Method in interface org.canova.api.io.serializers.Serialization
getSerializer(Class<T>) - Method in class org.canova.api.io.serializers.SerializationFactory
getSortedKeys() - Method in class org.canova.api.berkeley.Counter
getStringCollection(String) - Method in class org.canova.api.conf.Configuration: Get the comma delimited values of the name property as a collection of Strings.
getStringCollection(String) - Static method in class org.canova.api.util.StringUtils: Returns a collection of strings.
getStrings(String) - Method in class org.canova.api.conf.Configuration: Get the comma delimited values of the name property as an array of Strings.
getStrings(String, String...) - Method in class org.canova.api.conf.Configuration: Get the comma delimited values of the name property as an array of Strings.
getStrings(String) - Static method in class org.canova.api.util.StringUtils: Returns an arraylist of strings.
getThird() - Method in class org.canova.api.berkeley.Triple
getTrimmedStringCollection(String) - Method in class org.canova.api.conf.Configuration: Get the comma delimited values of the name property as a collection of Strings, trimmed of the leading and trailing whitespace.
getTrimmedStringCollection(String) - Static method in class org.canova.api.util.StringUtils: Splits a comma separated value String, trimming leading and trailing whitespace on each value.
getTrimmedStrings(String) - Method in class org.canova.api.conf.Configuration: Get the comma delimited values of the name property as an array of Strings, trimmed of the leading and trailing whitespace.
getTrimmedStrings(String, String...) - Method in class org.canova.api.conf.Configuration: Get the comma delimited values of the name property as an array of Strings, trimmed of the leading and trailing whitespace.
getTrimmedStrings(String) - Static method in class org.canova.api.util.StringUtils: Splits a comma separated value String, trimming leading and trailing whitespace on each value.
getValue() - Method in class org.canova.api.util.MultiDimensionalMap.Entry
getVIntSize(long) - Static method in class org.canova.api.io.WritableUtils: Get the encoded length if an integer is stored in a variable-length format
getVIntSize(long) - Static method in class org.canova.api.records.Utils: Get the encoded length if an integer is stored in a variable-length format
gr(double, double) - Static method in class org.canova.api.util.MathUtils: Tests if a is greater than b.
grow(int) - Method in class org.canova.api.berkeley.PriorityQueue

H

hashBytes(byte[], int, int) - Static method in class org.canova.api.io.WritableComparator: Compute hash for binary data.
hashBytes(byte[], int) - Static method in class org.canova.api.io.WritableComparator: Compute hash for binary data.
hashCode() - Method in class org.canova.api.berkeley.Pair
hashCode() - Method in class org.canova.api.berkeley.Triple
hashCode() - Method in class org.canova.api.io.BinaryComparable: Return a hash of the bytes returned from {#getBytes()}.
hashCode() - Method in class org.canova.api.io.data.BooleanWritable
hashCode() - Method in class org.canova.api.io.data.ByteWritable
hashCode() - Method in class org.canova.api.io.data.DoubleWritable
hashCode() - Method in class org.canova.api.io.data.FloatWritable
hashCode() - Method in class org.canova.api.io.data.IntWritable
hashCode() - Method in class org.canova.api.io.data.LongWritable
hashCode() - Method in class org.canova.api.io.data.Text
hashCode() - Method in class org.canova.api.records.Buffer
hashCode() - Method in class org.canova.api.util.MultiDimensionalMap
HashMapFactory() - Constructor for class org.canova.api.berkeley.MapFactory.HashMapFactory
hashSet() - Static method in class org.canova.api.util.MultiDimensionalSet
hasNext() - Method in class org.canova.api.berkeley.Iterators.FilteredIterator
hasNext() - Method in class org.canova.api.berkeley.Iterators.IteratorIterator
hasNext() - Method in class org.canova.api.berkeley.Iterators.Transform
hasNext() - Method in class org.canova.api.berkeley.Iterators.TransformingIterator
hasNext() - Method in class org.canova.api.berkeley.PriorityQueue
hasNext() - Method in interface org.canova.api.berkeley.PriorityQueueInterface: Returns true if the priority queue is non-empty
hasNext() - Method in class org.canova.api.records.reader.impl.CollectionRecordReader
hasNext() - Method in class org.canova.api.records.reader.impl.ComposableRecordReader
hasNext() - Method in class org.canova.api.records.reader.impl.FileRecordReader
hasNext() - Method in class org.canova.api.records.reader.impl.LibSvmRecordReader
hasNext() - Method in class org.canova.api.records.reader.impl.LineRecordReader
hasNext() - Method in class org.canova.api.records.reader.impl.MatlabRecordReader
hasNext() - Method in interface org.canova.api.records.reader.RecordReader: Whether there are anymore records
heapifyDown(int) - Method in class org.canova.api.berkeley.PriorityQueue
heapifyUp(int) - Method in class org.canova.api.berkeley.PriorityQueue
hexchars - Static variable in class org.canova.api.records.Utils
hexStringToByte(String) - Static method in class org.canova.api.util.StringUtils: Given a hexstring this will return the byte array corresponding to the string
humanReadableInt(long) - Static method in class org.canova.api.util.StringUtils: Given an integer, return a string that is in an approximate, but human readable format.
hypergeometric(int, int, int, int) - Static method in class org.canova.api.berkeley.SloppyMath: Find a hypergeometric distribution.
hypotenuse(double, double) - Static method in class org.canova.api.util.MathUtils: sqrt(a^2 + b^2) without under/overflow.

I

IdentityHashMapFactory() - Constructor for class org.canova.api.berkeley.MapFactory.IdentityHashMapFactory
idf(double, double) - Static method in class org.canova.api.util.MathUtils: Inverse document frequency: the total docs divided by the number of times the word appeared in a document
incr() - Method in interface org.canova.api.records.Index
incrementAll(Collection<? extends E>, double) - Method in class org.canova.api.berkeley.Counter: Increment each element in a given collection by a given amount.
incrementAll(Counter<T>) - Method in class org.canova.api.berkeley.Counter
incrementAll(Map<K, V>, double) - Method in class org.canova.api.berkeley.CounterMap
incrementAll(CounterMap<K, V>) - Method in class org.canova.api.berkeley.CounterMap
incrementCount(E, double) - Method in class org.canova.api.berkeley.Counter: Increment a key's count by the given amount.
incrementCount(K, V, double) - Method in class org.canova.api.berkeley.CounterMap: Increments the count for a particular (key, value) pair.
Index - Interface in org.canova.api.records: Interface that acts as an iterator for deserializing maps.
Index - Class in org.canova.api.util: An index is a applyTransformToDestination of objects augmented with a list and a reverse lookup table for fast lookups.
Index() - Constructor for class org.canova.api.util.Index
indexOf(Object) - Method in class org.canova.api.util.Index
information(double[]) - Static method in class org.canova.api.util.MathUtils: This returns the entropy for a given vector of probabilities.
initialize(InputSplit) - Method in class org.canova.api.records.reader.impl.CollectionRecordReader
initialize(Configuration, InputSplit) - Method in class org.canova.api.records.reader.impl.CollectionRecordReader
initialize(InputSplit) - Method in class org.canova.api.records.reader.impl.ComposableRecordReader
initialize(Configuration, InputSplit) - Method in class org.canova.api.records.reader.impl.ComposableRecordReader
initialize(Configuration, InputSplit) - Method in class org.canova.api.records.reader.impl.CSVRecordReader
initialize(InputSplit) - Method in class org.canova.api.records.reader.impl.FileRecordReader
initialize(Configuration, InputSplit) - Method in class org.canova.api.records.reader.impl.FileRecordReader
initialize(InputSplit) - Method in class org.canova.api.records.reader.impl.LibSvmRecordReader
initialize(Configuration, InputSplit) - Method in class org.canova.api.records.reader.impl.LibSvmRecordReader
initialize(InputSplit) - Method in class org.canova.api.records.reader.impl.LineRecordReader
initialize(Configuration, InputSplit) - Method in class org.canova.api.records.reader.impl.LineRecordReader
initialize(Configuration, InputSplit) - Method in class org.canova.api.records.reader.impl.SVMLightRecordReader
initialize(InputSplit) - Method in interface org.canova.api.records.reader.RecordReader: Called once at initialization.
initialize(Configuration, InputSplit) - Method in interface org.canova.api.records.reader.RecordReader: Called once at initialization.
initialize(Configuration) - Method in interface org.canova.api.vector.Vectorizer: Initialize based on a configuration
InputFormat - Interface in org.canova.api.formats.input: Create an input format
InputSplit - Interface in org.canova.api.split: An input split
InputStreamInputSplit - Class in org.canova.api.split: Input stream input split.
InputStreamInputSplit(InputStream, String) - Constructor for class org.canova.api.split.InputStreamInputSplit: Instantiate with the given file as a uri
InputStreamInputSplit(InputStream, File) - Constructor for class org.canova.api.split.InputStreamInputSplit: Instantiate with the given file as a uri
InputStreamInputSplit(InputStream, URI) - Constructor for class org.canova.api.split.InputStreamInputSplit: Instantiate with the given file as a uri
InputStreamInputSplit(InputStream) - Constructor for class org.canova.api.split.InputStreamInputSplit
IntegerRanges() - Constructor for class org.canova.api.conf.Configuration.IntegerRanges
IntegerRanges(String) - Constructor for class org.canova.api.conf.Configuration.IntegerRanges
intersection(Collection<T>, Collection<T>) - Static method in class org.canova.api.util.SetUtils
intersectionP(Set<? extends T>, Set<? extends T>) - Static method in class org.canova.api.util.SetUtils
intPow(int, int) - Static method in class org.canova.api.berkeley.SloppyMath: exponentiation like we learned in grade school: multiply b by itself e times.
intPow(float, int) - Static method in class org.canova.api.berkeley.SloppyMath: exponentiation like we learned in grade school: multiply b by itself e times.
intPow(double, int) - Static method in class org.canova.api.berkeley.SloppyMath: exponentiation like we learned in grade school: multiply b by itself e times.
IntWritable - Class in org.canova.api.io.data: A WritableComparable for ints.
IntWritable() - Constructor for class org.canova.api.io.data.IntWritable
IntWritable(int) - Constructor for class org.canova.api.io.data.IntWritable
IntWritable.Comparator - Class in org.canova.api.io.data: A Comparator optimized for IntWritable.
invert() - Method in class org.canova.api.berkeley.CounterMap: Constructs reverse CounterMap where the count of a pair (k,v) is the count of (v,k) in the current CounterMap
isDangerous(double) - Static method in class org.canova.api.berkeley.SloppyMath: Returns true if the argument is a "dangerous" double to have around, namely one that is infinite, NaN or zero.
isDangerous(float) - Static method in class org.canova.api.berkeley.SloppyMath
isDiscreteProb(double, double) - Static method in class org.canova.api.berkeley.SloppyMath
isEmpty() - Method in class org.canova.api.berkeley.Counter: True if there are no entries in the counter (false does not mean totalCount > 0)
isEmpty() - Method in class org.canova.api.berkeley.CounterMap: True if there are no entries in the CounterMap (false does not mean totalCount > 0)
isEmpty() - Method in class org.canova.api.berkeley.PriorityQueue
isEmpty() - Method in interface org.canova.api.berkeley.PriorityQueueInterface: True if the queue is empty (size == 0).
isEmpty() - Method in class org.canova.api.util.MultiDimensionalMap: Returns true if this map contains no key-value mappings.
isEmpty() - Method in class org.canova.api.util.MultiDimensionalSet: Returns true if this applyTransformToDestination contains no elements.
isEqualTo(Counter<E>) - Method in class org.canova.api.berkeley.Counter
isEqualTo(CounterMap<K, V>) - Method in class org.canova.api.berkeley.CounterMap
isGreater(double, double) - Static method in class org.canova.api.berkeley.SloppyMath
isIncluded(int) - Method in class org.canova.api.conf.Configuration.IntegerRanges: Is the given value in the set of ranges
isNegativeVInt(byte) - Static method in class org.canova.api.io.WritableUtils: Given the first byte of a vint/vlong, determine the sign
isVeryDangerous(double) - Static method in class org.canova.api.berkeley.SloppyMath: Returns true if the argument is a "very dangerous" double to have around, namely one that is infinite or NaN.
iter - Variable in class org.canova.api.records.reader.impl.FileRecordReader
iterator() - Method in class org.canova.api.conf.Configuration: Get an Iterator to go through the list of String key-value pairs in the configuration.
iterator() - Method in class org.canova.api.util.MultiDimensionalSet: Returns an iterator over the elements in this applyTransformToDestination.
IteratorIterator(Iterator, Factory<Iterator<T>>) - Constructor for class org.canova.api.berkeley.Iterators.IteratorIterator
Iterators - Class in org.canova.api.berkeley
Iterators.FilteredIterator<T> - Class in org.canova.api.berkeley: Creates an iterator that only returns items of a base iterator that pass a filter.
Iterators.IteratorIterator<T> - Class in org.canova.api.berkeley: Wraps a two-level iteration scenario in an iterator.
Iterators.Transform<S,T> - Class in org.canova.api.berkeley: Wraps a base iterator with a transformation function.
Iterators.TransformingIterator<I,O> - Class in org.canova.api.berkeley

J

join(Iterable, String) - Static method in class org.canova.api.berkeley.StringUtils: Joins each elem in the Collection with the given glue.
join(List<?>, String) - Static method in class org.canova.api.berkeley.StringUtils: Joins each elem in the List with the given glue.
join(Object[], String) - Static method in class org.canova.api.berkeley.StringUtils: Joins each elem in the array with the given glue.
join(List) - Static method in class org.canova.api.berkeley.StringUtils: Joins elems with a space.
join(Object[]) - Static method in class org.canova.api.berkeley.StringUtils: Joins elems with a space.
join(CharSequence, Iterable<String>) - Static method in class org.canova.api.util.StringUtils: Concatenates strings, using a separator.
joinObjects(CharSequence, Iterable<?>) - Static method in class org.canova.api.util.StringUtils: Concatenates stringified objects, using a separator.

K

keepBottomNKeys(int) - Method in class org.canova.api.berkeley.Counter
keepTopNKeys(int) - Method in class org.canova.api.berkeley.Counter
keySet() - Method in class org.canova.api.berkeley.Counter: The elements in the counter.
keySet() - Method in class org.canova.api.berkeley.CounterMap: Returns the keys that have been inserted into this CounterMap.
keySet() - Method in class org.canova.api.util.MultiDimensionalMap: Returns a Set view of the keys contained in this map.
kroneckerDelta(double, double) - Static method in class org.canova.api.util.MathUtils: This returns the kronecker delta of two doubles.

L

labels - Variable in class org.canova.api.records.reader.impl.FileRecordReader
LABELS - Static variable in interface org.canova.api.records.reader.RecordReader
LabelWriterConverter - Class in org.canova.api.io.converters: Convert a label in to an index based on the
LabelWriterConverter(List<String>) - Constructor for class org.canova.api.io.converters.LabelWriterConverter
lambert(double, double) - Static method in class org.canova.api.berkeley.SloppyMath
leftChild(int) - Method in class org.canova.api.berkeley.PriorityQueue
length - Variable in class org.canova.api.split.BaseInputSplit
length() - Method in class org.canova.api.split.BaseInputSplit
length() - Method in class org.canova.api.split.FileSplit
length() - Method in interface org.canova.api.split.InputSplit: Length of the split
length() - Method in class org.canova.api.split.InputStreamInputSplit
length() - Method in class org.canova.api.split.StringSplit
LexicographicPairComparator(Comparator<F>, Comparator<S>) - Constructor for class org.canova.api.berkeley.Pair.LexicographicPairComparator
LibSvm - Interface in org.canova.api.records.reader
LibSvmInputFormat - Class in org.canova.api.formats.input.impl: Lib svm input format
LibSvmInputFormat() - Constructor for class org.canova.api.formats.input.impl.LibSvmInputFormat
LibSvmOutputFormat - Class in org.canova.api.formats.output.impl
LibSvmOutputFormat() - Constructor for class org.canova.api.formats.output.impl.LibSvmOutputFormat
LibSvmRecordReader - Class in org.canova.api.records.reader.impl
LibSvmRecordReader() - Constructor for class org.canova.api.records.reader.impl.LibSvmRecordReader
LibSvmRecordWriter - Class in org.canova.api.records.writer.impl: Each line is in the format: label i:value where is is the current index and value is a double separated by space
LibSvmRecordWriter(File) - Constructor for class org.canova.api.records.writer.impl.LibSvmRecordWriter
LibSvmRecordWriter(File, boolean) - Constructor for class org.canova.api.records.writer.impl.LibSvmRecordWriter
LibSvmRecordWriter(Configuration) - Constructor for class org.canova.api.records.writer.impl.LibSvmRecordWriter
LibSvmRecordWriter() - Constructor for class org.canova.api.records.writer.impl.LibSvmRecordWriter
limitDecimalTo2(double) - Static method in class org.canova.api.util.StringUtils
LineInputFormat - Class in org.canova.api.formats.input.impl: Line input format creates an @link{LineRecordReader}
LineInputFormat() - Constructor for class org.canova.api.formats.input.impl.LineInputFormat
LineOutputFormat - Class in org.canova.api.formats.output.impl: Line output format
LineOutputFormat() - Constructor for class org.canova.api.formats.output.impl.LineOutputFormat
LineRecordReader - Class in org.canova.api.records.reader.impl: Reads files line by line
LineRecordReader() - Constructor for class org.canova.api.records.reader.impl.LineRecordReader
LineRecordWriter - Class in org.canova.api.records.writer.impl: Line record writer
LineRecordWriter() - Constructor for class org.canova.api.records.writer.impl.LineRecordWriter
LineRecordWriter(File) - Constructor for class org.canova.api.records.writer.impl.LineRecordWriter
LineRecordWriter(File, boolean) - Constructor for class org.canova.api.records.writer.impl.LineRecordWriter
LineRecordWriter(Configuration) - Constructor for class org.canova.api.records.writer.impl.LineRecordWriter
locations - Variable in class org.canova.api.split.BaseInputSplit
locations() - Method in class org.canova.api.split.BaseInputSplit
locations() - Method in interface org.canova.api.split.InputSplit: Locations of the splits
locations() - Method in class org.canova.api.split.InputStreamInputSplit
locations() - Method in class org.canova.api.split.StringSplit
log2 - Static variable in class org.canova.api.util.MathUtils: The natural logarithm of 2.
log2(double) - Static method in class org.canova.api.util.MathUtils: Returns the logarithm of a for base 2.
logAdd(float, float) - Static method in class org.canova.api.berkeley.SloppyMath: Returns the log of the sum of two numbers, which are themselves input in log form.
logAdd(double, double) - Static method in class org.canova.api.berkeley.SloppyMath: Returns the log of the sum of two numbers, which are themselves input in log form.
logAdd(float[]) - Static method in class org.canova.api.berkeley.SloppyMath
logAdd(double[]) - Static method in class org.canova.api.berkeley.SloppyMath
logAdd(List<Double>) - Static method in class org.canova.api.berkeley.SloppyMath
logAdd(float[], int) - Static method in class org.canova.api.berkeley.SloppyMath
logAdd(double[], int) - Static method in class org.canova.api.berkeley.SloppyMath
logAdd(Counter<T>) - Static method in class org.canova.api.berkeley.SloppyMath
logAdd_Old(float[]) - Static method in class org.canova.api.berkeley.SloppyMath
logNormalize(double[]) - Static method in class org.canova.api.berkeley.SloppyMath
logs2probs(double[]) - Static method in class org.canova.api.util.MathUtils: Converts an array containing the natural logarithms of probabilities stored in a vector back into probabilities.
logSubtract(double, double) - Static method in class org.canova.api.berkeley.SloppyMath
LOGTOLERANCE - Static variable in class org.canova.api.berkeley.SloppyMath: If a difference is bigger than this in log terms, then the sum or difference of them will just be the larger (to 12 or so decimal places for double, and 7 or 8 for float).
longestCommonSubstring(String, String) - Static method in class org.canova.api.berkeley.StringUtils: Computes the longest common substring of s and t.
LongWritable - Class in org.canova.api.io.data: A WritableComparable for longs.
LongWritable() - Constructor for class org.canova.api.io.data.LongWritable
LongWritable(long) - Constructor for class org.canova.api.io.data.LongWritable
LongWritable.Comparator - Class in org.canova.api.io.data: A Comparator optimized for LongWritable.
LongWritable.DecreasingComparator - Class in org.canova.api.io.data: A decreasing Comparator optimized for LongWritable.
lookingAt(String, String) - Static method in class org.canova.api.berkeley.StringUtils: Say whether this regular expression can be found at the beginning of this String.

M

main(String[]) - Static method in class org.canova.api.berkeley.Counter
main(String[]) - Static method in class org.canova.api.berkeley.CounterMap
main(String[]) - Static method in class org.canova.api.berkeley.PriorityQueue
main(String[]) - Static method in class org.canova.api.berkeley.SloppyMath: Tests the hypergeometric distribution code, or other functions provided in this module.
main(String[]) - Static method in class org.canova.api.berkeley.StringUtils
main(String[]) - Static method in class org.canova.api.conf.Configuration: For debugging.
makePair(S, T) - Static method in class org.canova.api.berkeley.Pair
makeTriple(S, T, U) - Static method in class org.canova.api.berkeley.Triple
manhattanDistance(double[], double[]) - Static method in class org.canova.api.util.MathUtils: This will calculate the Manhattan distance between two sets of points.
MapFactory<K,V> - Class in org.canova.api.berkeley: The MapFactory is a mechanism for specifying what kind of map is to be used by some object.
MapFactory() - Constructor for class org.canova.api.berkeley.MapFactory
MapFactory.HashMapFactory<K,V> - Class in org.canova.api.berkeley
MapFactory.IdentityHashMapFactory<K,V> - Class in org.canova.api.berkeley
MapFactory.TreeMapFactory<K,V> - Class in org.canova.api.berkeley
MapFactory.WeakHashMapFactory<K,V> - Class in org.canova.api.berkeley
matches(String, String) - Static method in class org.canova.api.berkeley.StringUtils: Say whether this regular expression matches this String.
MathUtils - Class in org.canova.api.util: This is a math utils class.
MathUtils() - Constructor for class org.canova.api.util.MathUtils
MatlabInputFormat - Class in org.canova.api.formats.input.impl: Matlab input format
MatlabInputFormat() - Constructor for class org.canova.api.formats.input.impl.MatlabInputFormat
MatlabRecordReader - Class in org.canova.api.records.reader.impl: Matlab record reader
MatlabRecordReader() - Constructor for class org.canova.api.records.reader.impl.MatlabRecordReader
MatlabRecordWriter - Class in org.canova.api.records.writer.impl: Write matlab records
MatlabRecordWriter() - Constructor for class org.canova.api.records.writer.impl.MatlabRecordWriter
MatlabRecordWriter(File) - Constructor for class org.canova.api.records.writer.impl.MatlabRecordWriter
MatlabRecordWriter(File, boolean) - Constructor for class org.canova.api.records.writer.impl.MatlabRecordWriter
MatlabRecordWriter(Configuration) - Constructor for class org.canova.api.records.writer.impl.MatlabRecordWriter
max() - Method in class org.canova.api.berkeley.Counter
max(int, int, int) - Static method in class org.canova.api.berkeley.SloppyMath: Returns the minimum of three int values.
max(float, float) - Static method in class org.canova.api.berkeley.SloppyMath: Returns the greater of two float values.
max(double, double) - Static method in class org.canova.api.berkeley.SloppyMath: Returns the greater of two double values.
max(double[]) - Static method in class org.canova.api.util.MathUtils
maxIndex(double[]) - Static method in class org.canova.api.util.MathUtils: Returns index of maximum element in a given array of doubles.
maxLengthIterator(Iterator<T>, int) - Static method in class org.canova.api.berkeley.Iterators: Provides a max number of elements for an underlying base iterator.
mean(double[]) - Static method in class org.canova.api.util.MathUtils: Computes the mean for an array of doubles.
mergeCoords(double[], double[]) - Static method in class org.canova.api.util.MathUtils: This will merge the coordinates of the given coordinate system.
mergeCoords(List<Double>, List<Double>) - Static method in class org.canova.api.util.MathUtils: This will merge the coordinates of the given coordinate system.
min() - Method in class org.canova.api.berkeley.Counter
min(int, int, int) - Static method in class org.canova.api.berkeley.SloppyMath: Returns the minimum of three int values.
min(float, float) - Static method in class org.canova.api.berkeley.SloppyMath: Returns the smaller of two float values.
min(double, double) - Static method in class org.canova.api.berkeley.SloppyMath: Returns the smaller of two double values.
min(double[]) - Static method in class org.canova.api.util.MathUtils
MultiDimensionalMap<K,T,V> - Class in org.canova.api.util: Multiple key map
MultiDimensionalMap(Map<Pair<K, T>, V>) - Constructor for class org.canova.api.util.MultiDimensionalMap
MultiDimensionalMap.Entry<K,T,V> - Class in org.canova.api.util
MultiDimensionalSet<K,V> - Class in org.canova.api.util: Created by agibsonccc on 4/29/14.
MultiDimensionalSet(Set<Pair<K, V>>) - Constructor for class org.canova.api.util.MultiDimensionalSet
MyMethod<I,O> - Interface in org.canova.api.berkeley: A function wrapping interface.

N

NAME_SPACE - Static variable in interface org.canova.api.records.reader.RecordReader
nChooseK(int, int) - Static method in class org.canova.api.berkeley.SloppyMath: Computes n choose k in an efficient way.
NEW_LINE - Static variable in class org.canova.api.records.writer.impl.FileRecordWriter
newHashBackedMap() - Static method in class org.canova.api.util.MultiDimensionalMap: Thread safe hash map impl
newInstance(Object...) - Method in class org.canova.api.berkeley.Factory.DefaultFactory
newInstance(Object...) - Method in interface org.canova.api.berkeley.Factory
newInstance(Class<T>, Configuration) - Static method in class org.canova.api.util.ReflectionUtils: Create an object for the given class and initialize it from conf
newIterable(Iterator<T>) - Static method in class org.canova.api.berkeley.Iterators: Wraps an iterator as an iterable
newKey() - Method in class org.canova.api.io.WritableComparator: Construct a new WritableComparable instance.
newPair(S, T) - Static method in class org.canova.api.berkeley.Pair
newThreadSafeHashBackedMap() - Static method in class org.canova.api.util.MultiDimensionalMap: Thread safe hash map implementation
newThreadSafeTreeBackedMap() - Static method in class org.canova.api.util.MultiDimensionalMap: Thread safe sorted map implementation
newTreeBackedMap() - Static method in class org.canova.api.util.MultiDimensionalMap: Tree map implementation
next() - Method in class org.canova.api.berkeley.Iterators.FilteredIterator
next() - Method in class org.canova.api.berkeley.Iterators.IteratorIterator
next() - Method in class org.canova.api.berkeley.Iterators.Transform
next() - Method in class org.canova.api.berkeley.Iterators.TransformingIterator
next() - Method in class org.canova.api.berkeley.PriorityQueue
next() - Method in interface org.canova.api.berkeley.PriorityQueueInterface: Returns the element in the queue with highest priority, and pops it from the queue.
next() - Method in class org.canova.api.records.reader.impl.CollectionRecordReader
next() - Method in class org.canova.api.records.reader.impl.ComposableRecordReader
next() - Method in class org.canova.api.records.reader.impl.CSVRecordReader
next() - Method in class org.canova.api.records.reader.impl.FileRecordReader
next() - Method in class org.canova.api.records.reader.impl.LibSvmRecordReader
next() - Method in class org.canova.api.records.reader.impl.LineRecordReader
next() - Method in class org.canova.api.records.reader.impl.MatlabRecordReader
next() - Method in class org.canova.api.records.reader.impl.SVMLightRecordReader
next() - Method in interface org.canova.api.records.reader.RecordReader: Get the next record
nextList(List<Iterator<T>>) - Static method in class org.canova.api.berkeley.Iterators
nextPowOf2(long) - Static method in class org.canova.api.util.MathUtils: See: http://stackoverflow.com/questions/466204/rounding-off-to-nearest-power-of-2
noNaNDivide(double, double) - Static method in class org.canova.api.berkeley.SloppyMath
normalize() - Method in class org.canova.api.berkeley.Counter: Destructively normalize this Counter in place.
normalize() - Method in class org.canova.api.berkeley.CounterMap
normalize(double, double, double) - Static method in class org.canova.api.util.MathUtils: Normalize a value (val - min) / (max - min)
normalize(double[], double) - Static method in class org.canova.api.util.MathUtils: Normalizes the doubles in the array using the given value.
normalizeToOne(double[]) - Static method in class org.canova.api.util.MathUtils
normalizeWithDiscount(double) - Method in class org.canova.api.berkeley.CounterMap
nthIndex(String, char, int) - Static method in class org.canova.api.berkeley.StringUtils: Returns the index of the nth occurrence of ch in s, or -1 if there are less than n occurrences of ch.
NUM_ATTRIBUTES - Static variable in class org.canova.api.records.reader.impl.SVMLightRecordReader

O

objectIterator(ObjectInputStream) - Static method in class org.canova.api.berkeley.Iterators
oneItemIterator(U) - Static method in class org.canova.api.berkeley.Iterators
oneTailedFishersExact(int, int, int, int) - Static method in class org.canova.api.berkeley.SloppyMath: Find a one-tailed Fisher's exact probability.
onRecord(Collection<Writable>) - Method in interface org.canova.api.vector.Vectorizer.RecordCallBack: The record callback
open(InputStream) - Method in interface org.canova.api.io.serializers.Deserializer: Prepare the deserializer for reading.
open(OutputStream) - Method in interface org.canova.api.io.serializers.Serializer: Prepare the serializer for writing.
org.canova.api.berkeley - package org.canova.api.berkeley
org.canova.api.conf - package org.canova.api.conf
org.canova.api.exceptions - package org.canova.api.exceptions
org.canova.api.formats.input - package org.canova.api.formats.input
org.canova.api.formats.input.impl - package org.canova.api.formats.input.impl
org.canova.api.formats.output - package org.canova.api.formats.output
org.canova.api.formats.output.impl - package org.canova.api.formats.output.impl
org.canova.api.io - package org.canova.api.io
org.canova.api.io.converters - package org.canova.api.io.converters
org.canova.api.io.data - package org.canova.api.io.data
org.canova.api.io.serializers - package org.canova.api.io.serializers
org.canova.api.records - package org.canova.api.records
org.canova.api.records.reader - package org.canova.api.records.reader
org.canova.api.records.reader.factory - package org.canova.api.records.reader.factory
org.canova.api.records.reader.impl - package org.canova.api.records.reader.impl
org.canova.api.records.writer - package org.canova.api.records.writer
org.canova.api.records.writer.impl - package org.canova.api.records.writer.impl
org.canova.api.split - package org.canova.api.split
org.canova.api.util - package org.canova.api.util
org.canova.api.vector - package org.canova.api.vector
org.canova.api.writable - package org.canova.api.writable
out - Variable in class org.canova.api.records.writer.impl.FileRecordWriter
OUTPUT_PATH - Static variable in interface org.canova.api.formats.output.OutputFormat
OutputFormat - Interface in org.canova.api.formats.output: Create a record writer

P

pad(String, int) - Static method in class org.canova.api.berkeley.StringUtils: Return a String of length a minimum of totalChars characters by padding the input String str with spaces.
pad(Object, int) - Static method in class org.canova.api.berkeley.StringUtils: Pads the toString value of the given Object.
padLeft(String, int) - Static method in class org.canova.api.berkeley.StringUtils: Pads the given String to the left with spaces to ensure that it's at least totalChars long.
padLeft(Object, int) - Static method in class org.canova.api.berkeley.StringUtils
padLeft(int, int) - Static method in class org.canova.api.berkeley.StringUtils
padLeft(double, int) - Static method in class org.canova.api.berkeley.StringUtils
padOrTrim(String, int) - Static method in class org.canova.api.berkeley.StringUtils: Pad or trim so as to produce a string of exactly a certain length.
padOrTrim(Object, int) - Static method in class org.canova.api.berkeley.StringUtils: Pad or trim the toString value of the given Object.
Pair<F,S> - Class in org.canova.api.berkeley: A generic-typed pair of objects.
Pair(F, S) - Constructor for class org.canova.api.berkeley.Pair
Pair.DefaultLexicographicPairComparator<F extends Comparable<F>,S extends Comparable<S>> - Class in org.canova.api.berkeley
Pair.FirstComparator<S extends Comparable<? super S>,T> - Class in org.canova.api.berkeley
Pair.LexicographicPairComparator<F,S> - Class in org.canova.api.berkeley
Pair.ReverseFirstComparator<S extends Comparable<? super S>,T> - Class in org.canova.api.berkeley
Pair.ReverseSecondComparator<S,T extends Comparable<? super T>> - Class in org.canova.api.berkeley
Pair.SecondComparator<S,T extends Comparable<? super T>> - Class in org.canova.api.berkeley
parent(int) - Method in class org.canova.api.berkeley.PriorityQueue
parseCommandLineArguments(String[]) - Static method in class org.canova.api.berkeley.StringUtils: A simpler form of command line argument parsing.
partitionVariable(List<Double>, int) - Static method in class org.canova.api.util.MathUtils: This will partition the given whole variable data applyTransformToDestination in to the specified chunk number.
PATH - Static variable in class org.canova.api.records.writer.impl.FileRecordWriter
peek() - Method in class org.canova.api.berkeley.PriorityQueue
peek() - Method in interface org.canova.api.berkeley.PriorityQueueInterface: Returns the highest-priority element in the queue, but does not pop it.
pennPOSToWordnetPOS(String) - Static method in class org.canova.api.berkeley.StringUtils: Computes the WordNet 2.0 POS tag corresponding to the PTB POS tag s.
permutation(double, double) - Static method in class org.canova.api.util.MathUtils: This returns the permutation of n choose r.
printStringOneCharPerLine(String) - Static method in class org.canova.api.berkeley.StringUtils
printThreadInfo(PrintWriter, String) - Static method in class org.canova.api.util.ReflectionUtils: Print all of the thread's information and stack traces.
printToFile(File, String, boolean) - Static method in class org.canova.api.berkeley.StringUtils: Prints to a file.
printToFile(File, String) - Static method in class org.canova.api.berkeley.StringUtils: Prints to a file.
printToFile(String, String, boolean) - Static method in class org.canova.api.berkeley.StringUtils: Prints to a file.
printToFile(String, String) - Static method in class org.canova.api.berkeley.StringUtils: Prints to a file.
PriorityQueue<E> - Class in org.canova.api.berkeley: A priority queue based on a binary heap.
PriorityQueue() - Constructor for class org.canova.api.berkeley.PriorityQueue
PriorityQueue(int) - Constructor for class org.canova.api.berkeley.PriorityQueue
PriorityQueueInterface<E> - Interface in org.canova.api.berkeley
probRound(double, Random) - Static method in class org.canova.api.util.MathUtils: Rounds a double to the next nearest integer value in a probabilistic fashion (e.g.
probToLogOdds(double) - Static method in class org.canova.api.util.MathUtils: Returns the log-odds for a given probability.
pruneKeysBelowThreshold(double) - Method in class org.canova.api.berkeley.Counter
put(E, double, boolean) - Method in class org.canova.api.berkeley.Counter: Set the count for the given key if it is larger than the previous one;
put(E, double) - Method in class org.canova.api.berkeley.PriorityQueue
put(E, double) - Method in interface org.canova.api.berkeley.PriorityQueueInterface: Adds a key to the queue with the given priority.
put(Pair<K, T>, V) - Method in class org.canova.api.util.MultiDimensionalMap: Associates the specified value with the specified key in this map (optional operation).
put(K, T, V) - Method in class org.canova.api.util.MultiDimensionalMap
putAll(Map<? extends Pair<K, T>, ? extends V>) - Method in class org.canova.api.util.MultiDimensionalMap: Copies all of the mappings from the specified map to this map (optional operation).

R

randomDoubleBetween(double, double) - Static method in class org.canova.api.util.MathUtils
randomFloatBetween(float, float) - Static method in class org.canova.api.util.MathUtils
randomNumberBetween(double, double) - Static method in class org.canova.api.util.MathUtils: Generates a random integer between the specified numbers
randomNumberBetween(double, double, RandomGenerator) - Static method in class org.canova.api.util.MathUtils: Generates a random integer between the specified numbers
RawComparator<T> - Interface in org.canova.api.io: A Comparator that operates directly on byte representations of objects.
readCompressedByteArray(DataInput) - Static method in class org.canova.api.io.WritableUtils
readCompressedString(DataInput) - Static method in class org.canova.api.io.WritableUtils
readCompressedStringArray(DataInput) - Static method in class org.canova.api.io.WritableUtils
readDouble(byte[], int) - Static method in class org.canova.api.io.WritableComparator: Parse a double from a byte array.
readDouble(byte[], int) - Static method in class org.canova.api.records.Utils: Parse a double from a byte array.
readEnum(DataInput, Class<T>) - Static method in class org.canova.api.io.WritableUtils: Read an Enum value from DataInput, Enums are read and written using String values.
readFields(DataInput) - Method in class org.canova.api.conf.Configuration
readFields(DataInput) - Method in class org.canova.api.formats.input.BaseInputFormat
readFields(DataInput) - Method in class org.canova.api.formats.input.impl.CSVInputFormat
readFields(DataInput) - Method in class org.canova.api.formats.input.impl.LineInputFormat
readFields(DataInput) - Method in class org.canova.api.io.data.BooleanWritable
readFields(DataInput) - Method in class org.canova.api.io.data.ByteWritable
readFields(DataInput) - Method in class org.canova.api.io.data.DoubleWritable
readFields(DataInput) - Method in class org.canova.api.io.data.FloatWritable
readFields(DataInput) - Method in class org.canova.api.io.data.IntWritable
readFields(DataInput) - Method in class org.canova.api.io.data.LongWritable
readFields(DataInput) - Method in class org.canova.api.io.data.Text: deserialize
readFields(DataInput) - Method in class org.canova.api.split.FileSplit
readFields(DataInput) - Method in class org.canova.api.split.InputStreamInputSplit
readFields(DataInput) - Method in class org.canova.api.split.StringSplit
readFields(DataInput) - Method in interface org.canova.api.writable.Writable: Deserialize the fields of this object from in.
readFloat(byte[], int) - Static method in class org.canova.api.io.WritableComparator: Parse a float from a byte array.
readFloat(byte[], int) - Static method in class org.canova.api.records.Utils: Parse a float from a byte array.
readInt(byte[], int) - Static method in class org.canova.api.io.WritableComparator: Parse an integer from a byte array.
readLong(byte[], int) - Static method in class org.canova.api.io.WritableComparator: Parse a long from a byte array.
readString(DataInput) - Static method in class org.canova.api.io.data.Text: Read a UTF8 encoded string from in
readString(DataInput) - Static method in class org.canova.api.io.WritableUtils
readStringArray(DataInput) - Static method in class org.canova.api.io.WritableUtils
readUnsignedShort(byte[], int) - Static method in class org.canova.api.io.WritableComparator: Parse an unsigned short from a byte array.
readVInt(byte[], int) - Static method in class org.canova.api.io.WritableComparator: Reads a zero-compressed encoded integer from a byte array and returns it.
readVInt(DataInput) - Static method in class org.canova.api.io.WritableUtils: Reads a zero-compressed encoded integer from input stream and returns it.
readVInt(byte[], int) - Static method in class org.canova.api.records.Utils: Reads a zero-compressed encoded integer from a byte array and returns it.
readVInt(DataInput) - Static method in class org.canova.api.records.Utils: Reads a zero-compressed encoded integer from a stream and returns it.
readVLong(byte[], int) - Static method in class org.canova.api.io.WritableComparator: Reads a zero-compressed encoded long from a byte array and returns it.
readVLong(DataInput) - Static method in class org.canova.api.io.WritableUtils: Reads a zero-compressed encoded long from input stream and returns it.
readVLong(byte[], int) - Static method in class org.canova.api.records.Utils: Reads a zero-compressed encoded long from a byte array and returns it.
readVLong(DataInput) - Static method in class org.canova.api.records.Utils: Reads a zero-compressed encoded long from a stream and return it.
RecordReader - Interface in org.canova.api.records.reader: Record reader
RecordReaderFactory - Interface in org.canova.api.records.reader.factory: Factory for creating RecordReader instance
RecordUtils - Class in org.canova.api.util: Create records from the specified input
RecordUtils() - Constructor for class org.canova.api.util.RecordUtils
RecordWriter - Interface in org.canova.api.records.writer: Record writer
RecordWriterFactory - Interface in org.canova.api.records.reader.factory: Factory for creating RecordWriter instance
ReflectionUtils - Class in org.canova.api.util: General reflection utils
ReflectionUtils() - Constructor for class org.canova.api.util.ReflectionUtils
relativeDifferance(double, double) - Static method in class org.canova.api.berkeley.SloppyMath
reloadConfiguration() - Method in class org.canova.api.conf.Configuration: Reload configuration from previously added resources.
remove() - Method in class org.canova.api.berkeley.Iterators.FilteredIterator
remove() - Method in class org.canova.api.berkeley.Iterators.IteratorIterator
remove() - Method in class org.canova.api.berkeley.Iterators.Transform
remove() - Method in class org.canova.api.berkeley.Iterators.TransformingIterator
remove() - Method in class org.canova.api.berkeley.PriorityQueue
remove() - Method in interface org.canova.api.berkeley.PriorityQueueInterface: Not supported -- next() already removes the head of the queue.
remove(Object) - Method in class org.canova.api.util.MultiDimensionalMap: Removes the mapping for a key from this map if it is present (optional operation).
remove(Object) - Method in class org.canova.api.util.MultiDimensionalSet: Removes the specified element from this applyTransformToDestination if it is present (optional operation).
removeAll(Collection<?>) - Method in class org.canova.api.util.MultiDimensionalSet: Removes from this applyTransformToDestination all of its elements that are contained in the specified collection (optional operation).
removeFirst() - Method in class org.canova.api.berkeley.PriorityQueue
removeKey(E) - Method in class org.canova.api.berkeley.Counter
removeKey(K) - Method in class org.canova.api.berkeley.CounterMap
removeKeyFromEntries(E) - Method in class org.canova.api.berkeley.Counter
reset(byte[], int) - Method in class org.canova.api.io.DataInputBuffer: Resets the data that the buffer reads.
reset(byte[], int, int) - Method in class org.canova.api.io.DataInputBuffer: Resets the data that the buffer reads.
reset() - Method in class org.canova.api.io.DataOutputBuffer: Resets the buffer to empty.
reset() - Method in class org.canova.api.records.Buffer: Reset the buffer to 0 size
retainAll(Collection<?>) - Method in class org.canova.api.util.MultiDimensionalSet: Retains only the elements in this applyTransformToDestination that are contained in the specified collection (optional operation).
reverse() - Method in class org.canova.api.berkeley.Pair
ReverseFirstComparator() - Constructor for class org.canova.api.berkeley.Pair.ReverseFirstComparator
ReverseSecondComparator() - Constructor for class org.canova.api.berkeley.Pair.ReverseSecondComparator
rightChild(int) - Method in class org.canova.api.berkeley.PriorityQueue
rootMeansSquaredError(double[], double[]) - Static method in class org.canova.api.util.MathUtils: This returns the root mean squared error of two data sets
round(double) - Static method in class org.canova.api.util.MathUtils: Rounds a double to the next nearest integer value.
roundDouble(double, int) - Static method in class org.canova.api.util.MathUtils: Rounds a double to the given number of decimal places.
roundFloat(float, int) - Static method in class org.canova.api.util.MathUtils: Rounds a double to the given number of decimal places.

S

sample(Random) - Method in class org.canova.api.berkeley.Counter: Will return a sample from the counter, will throw exception if any of the counts are < 0.0 or if the totalCount() <= 0.0
sample() - Method in class org.canova.api.berkeley.Counter: Will return a sample from the counter, will throw exception if any of the counts are < 0.0 or if the totalCount() <= 0.0
sampleDoublesInInterval(double[][], int) - Static method in class org.canova.api.util.MathUtils
scale(double) - Method in class org.canova.api.berkeley.Counter
scale(double) - Method in class org.canova.api.berkeley.CounterMap: Scale all entries in CounterMap by scaleFactor
scaledClone(double) - Method in class org.canova.api.berkeley.Counter
SecondComparator() - Constructor for class org.canova.api.berkeley.Pair.SecondComparator
SelfWritableConverter - Class in org.canova.api.io.converters: Baseline writable converter
SelfWritableConverter() - Constructor for class org.canova.api.io.converters.SelfWritableConverter
sequenceRecord() - Method in interface org.canova.api.records.reader.SequenceRecordReader: Returns a sequence record`
SequenceRecordReader - Interface in org.canova.api.records.reader: A sequence of records.
Serialization<T> - Interface in org.canova.api.io.serializers: Encapsulates a Serializer/Deserializer pair.
SerializationFactory - Class in org.canova.api.io.serializers: A factory for Serializations.
SerializationFactory(Configuration) - Constructor for class org.canova.api.io.serializers.SerializationFactory: Serializations are found by reading the io.serializations property from conf, which is a comma-delimited list of classnames.
serialize(T) - Method in interface org.canova.api.io.serializers.Serializer: Serialize t to the underlying output stream.
Serializer<T> - Interface in org.canova.api.io.serializers: Provides a facility for serializing objects of type to an OutputStream.
set(String, String) - Method in class org.canova.api.conf.Configuration: Set the value of the name property.
set(boolean) - Method in class org.canova.api.io.data.BooleanWritable: Set the value of the BooleanWritable
set(byte) - Method in class org.canova.api.io.data.ByteWritable: Set the value of this ByteWritable.
set(double) - Method in class org.canova.api.io.data.DoubleWritable
set(float) - Method in class org.canova.api.io.data.FloatWritable: Set the value of this FloatWritable.
set(int) - Method in class org.canova.api.io.data.IntWritable: Set the value of this IntWritable.
set(long) - Method in class org.canova.api.io.data.LongWritable: Set the value of this LongWritable.
set(String) - Method in class org.canova.api.io.data.Text: Set to contain the contents of a string.
set(byte[]) - Method in class org.canova.api.io.data.Text: Set to a utf8 byte array
set(Text) - Method in class org.canova.api.io.data.Text: copy a text.
set(byte[], int, int) - Method in class org.canova.api.io.data.Text: Set the Text to range of bytes
set(byte[]) - Method in class org.canova.api.records.Buffer: Use the specified bytes array as underlying sequence.
setAllCounts(double) - Method in class org.canova.api.berkeley.Counter: Sets all counts to the given value, but does not remove any keys
setBoolean(String, boolean) - Method in class org.canova.api.conf.Configuration: Set the value of the name property to a boolean.
setBooleanIfUnset(String, boolean) - Method in class org.canova.api.conf.Configuration: Set the given property, if it is currently unset.
setCapacity(int) - Method in class org.canova.api.records.Buffer: Change the capacity of the backing storage.
setClass(String, Class<?>, Class<?>) - Method in class org.canova.api.conf.Configuration: Set the value of the name property to the name of a theClass implementing the given interface xface.
setClassLoader(ClassLoader) - Method in class org.canova.api.conf.Configuration: Set the class loader that will be used to load the various objects.
setConf(Configuration) - Method in interface org.canova.api.conf.Configurable: Set the configuration to be used by this object.
setConf(Configuration) - Method in class org.canova.api.conf.Configured
setConf(Configuration) - Method in class org.canova.api.records.reader.impl.CollectionRecordReader
setConf(Configuration) - Method in class org.canova.api.records.reader.impl.ComposableRecordReader
setConf(Configuration) - Method in class org.canova.api.records.reader.impl.FileRecordReader
setConf(Configuration) - Method in class org.canova.api.records.reader.impl.LibSvmRecordReader
setConf(Configuration) - Method in class org.canova.api.records.reader.impl.LineRecordReader
setConf(Configuration) - Method in class org.canova.api.records.reader.impl.SVMLightRecordReader
setConf(Configuration) - Method in class org.canova.api.records.writer.impl.FileRecordWriter
setConf(Object, Configuration) - Static method in class org.canova.api.util.ReflectionUtils: Check and set 'configuration' if necessary.
setContentionTracing(boolean) - Static method in class org.canova.api.util.ReflectionUtils
setCount(E, double) - Method in class org.canova.api.berkeley.Counter: Set the count for the given key, clobbering any previous count.
setCount(K, V, double) - Method in class org.canova.api.berkeley.CounterMap: Sets the count for a particular (key, value) pair.
setCounter(K, Counter<V>) - Method in class org.canova.api.berkeley.CounterMap
setDefault(double) - Method in class org.canova.api.berkeley.CounterMap
setDeflt(double) - Method in class org.canova.api.berkeley.Counter
setDirty(boolean) - Method in class org.canova.api.berkeley.Counter
setFirst(F) - Method in class org.canova.api.berkeley.Pair
setFirst(S) - Method in class org.canova.api.berkeley.Triple
setFirstKey(K) - Method in class org.canova.api.util.MultiDimensionalMap.Entry
setFloat(String, float) - Method in class org.canova.api.conf.Configuration: Set the value of the name property to a float.
setIfUnset(String, String) - Method in class org.canova.api.conf.Configuration: Sets a property if it is currently unset.
setInt(String, int) - Method in class org.canova.api.conf.Configuration: Set the value of the name property to an int.
setIs(InputStream) - Method in class org.canova.api.split.InputStreamInputSplit
setLabels(List<String>) - Method in class org.canova.api.records.reader.impl.FileRecordReader
setLong(String, long) - Method in class org.canova.api.conf.Configuration: Set the value of the name property to a long.
setMaxCount(E, double) - Method in class org.canova.api.berkeley.Counter: Set's the key's count to the maximum of the current count and val.
setMinCount(E, double) - Method in class org.canova.api.berkeley.Counter: Set's the key's count to the minimum of the current count and val.
setPattern(String, Pattern) - Method in class org.canova.api.conf.Configuration: Set the given property to Pattern.
setQuietMode(boolean) - Method in class org.canova.api.conf.Configuration: Set the quietness-mode.
setSecond(S) - Method in class org.canova.api.berkeley.Pair
setSecond(T) - Method in class org.canova.api.berkeley.Triple
setSecondKey(T) - Method in class org.canova.api.util.MultiDimensionalMap.Entry
setStrings(String, String...) - Method in class org.canova.api.conf.Configuration: Set the array of string values for the name property as as comma delimited values.
setThird(U) - Method in class org.canova.api.berkeley.Triple
SetUtils - Class in org.canova.api.util
setValue(V) - Method in class org.canova.api.util.MultiDimensionalMap.Entry: Replaces the value corresponding to this entry with the specified value (optional operation).
sigmoid(double) - Static method in class org.canova.api.util.MathUtils: 1 / 1 + exp(-x)
simpleHostname(String) - Static method in class org.canova.api.util.StringUtils: Given a full hostname, return the word upto the first dot.
size() - Method in class org.canova.api.berkeley.Counter: The number of entries in the counter (not the total count -- use totalCount() instead).
size() - Method in class org.canova.api.berkeley.CounterMap: The number of keys in this CounterMap (not the number of key-value entries -- use totalSize() for that)
size() - Method in class org.canova.api.berkeley.PriorityQueue
size() - Method in interface org.canova.api.berkeley.PriorityQueueInterface: Number of elements in the queue.
size() - Method in class org.canova.api.conf.Configuration: Return the number of keys in the configuration.
size() - Method in class org.canova.api.util.Index
size() - Method in class org.canova.api.util.MultiDimensionalMap: Returns the number of key-value mappings in this map.
size() - Method in class org.canova.api.util.MultiDimensionalSet: Returns the number of elements in this applyTransformToDestination (its cardinality).
skip(DataInput) - Static method in class org.canova.api.io.data.Text: Skips over one Text in the input.
SKIP_NUM_LINES - Static variable in class org.canova.api.records.reader.impl.CSVRecordReader
skipCompressedByteArray(DataInput) - Static method in class org.canova.api.io.WritableUtils
skipFully(DataInput, int) - Static method in class org.canova.api.io.WritableUtils: Skip len number of bytes in input streamin
slope(double, double, double, double) - Method in class org.canova.api.util.MathUtils: This returns the slope of the given points.
SloppyMath - Class in org.canova.api.berkeley: The class SloppyMath contains methods for performing basic numeric operations.
SloppyMath() - Constructor for class org.canova.api.berkeley.SloppyMath
slurpFile(File) - Static method in class org.canova.api.berkeley.StringUtils: Returns all the text in the given File.
slurpFile(String, String) - Static method in class org.canova.api.berkeley.StringUtils: Returns all the text in the given file with the given encoding.
slurpFile(String) - Static method in class org.canova.api.berkeley.StringUtils: Returns all the text in the given file
slurpFileNoExceptions(String, String) - Static method in class org.canova.api.berkeley.StringUtils: Returns all the text in the given file with the given encoding.
slurpFileNoExceptions(File) - Static method in class org.canova.api.berkeley.StringUtils: Returns all the text in the given File.
slurpFileNoExceptions(String) - Static method in class org.canova.api.berkeley.StringUtils: Returns all the text in the given File.
slurpGBFile(String) - Static method in class org.canova.api.berkeley.StringUtils
slurpGBFileNoExceptions(String) - Static method in class org.canova.api.berkeley.StringUtils
slurpGBURL(URL) - Static method in class org.canova.api.berkeley.StringUtils: Returns all the text at the given URL.
slurpGBURLNoExceptions(URL) - Static method in class org.canova.api.berkeley.StringUtils: Returns all the text at the given URL.
slurpReader(Reader) - Static method in class org.canova.api.berkeley.StringUtils: Returns all the text from the given Reader.
slurpURL(URL, String) - Static method in class org.canova.api.berkeley.StringUtils: Returns all the text at the given URL.
slurpURL(URL) - Static method in class org.canova.api.berkeley.StringUtils: Returns all the text at the given URL.
slurpURL(String) - Static method in class org.canova.api.berkeley.StringUtils: Returns all the text at the given URL.
slurpURLNoExceptions(URL, String) - Static method in class org.canova.api.berkeley.StringUtils: Returns all the text at the given URL.
slurpURLNoExceptions(URL) - Static method in class org.canova.api.berkeley.StringUtils: Returns all the text at the given URL.
slurpURLNoExceptions(String) - Static method in class org.canova.api.berkeley.StringUtils: Returns all the text at the given URL.
sm(double, double) - Static method in class org.canova.api.util.MathUtils: Tests if a is smaller than b.
SMALL - Static variable in class org.canova.api.util.MathUtils: The small deviation allowed in double comparisons.
split(String) - Static method in class org.canova.api.berkeley.StringUtils: Splits on whitespace (\\s+).
split(String, String) - Static method in class org.canova.api.berkeley.StringUtils: Splits the given string using the given regex as delimiters.
split(String) - Static method in class org.canova.api.util.StringUtils: Split a string using the default separator
split(String, char, char) - Static method in class org.canova.api.util.StringUtils: Split a string using the given separator
splitOnCharWithQuoting(String, char, char, char) - Static method in class org.canova.api.berkeley.StringUtils: This function splits the String s into multiple Strings using the splitChar.
squaredLoss(double[], double[], double, double) - Static method in class org.canova.api.util.MathUtils: This will return the squared loss of the given points
ssError(double[], double[]) - Static method in class org.canova.api.util.MathUtils: How much of the variance is NOT explained by the regression
ssReg(double[], double[]) - Static method in class org.canova.api.util.MathUtils: How much of the variance is explained by the regression
ssTotal(double[], double[]) - Static method in class org.canova.api.util.MathUtils: Total variance in target attribute
string2long(String) - Static method in enum org.canova.api.util.StringUtils.TraditionalBinaryPrefix: Convert a string to long.
stringifyException(Throwable) - Static method in class org.canova.api.util.StringUtils: Make a string representation of the exception.
stringSimilarity(String...) - Static method in class org.canova.api.util.MathUtils: Calculate string similarity with tfidf weights relative to each character frequency and how many times a character appears in a given string
StringSplit - Class in org.canova.api.split: String split used for single line inputs
StringSplit(String) - Constructor for class org.canova.api.split.StringSplit
stringToProperties(String) - Static method in class org.canova.api.berkeley.StringUtils: This method converts a comma-separated String (with whitespace optionally allowed after the comma) representing properties to a Properties object.
stringToURI(String[]) - Static method in class org.canova.api.util.StringUtils
StringUtils - Class in org.canova.api.berkeley: StringUtils is a class for random String things.
StringUtils - Class in org.canova.api.util: General string utils
StringUtils() - Constructor for class org.canova.api.util.StringUtils
StringUtils.TraditionalBinaryPrefix - Enum in org.canova.api.util: The traditional binary prefixes, kilo, mega, ..., exa, which can be represented by a 64-bit integer.
stripNonAlphaNumerics(String) - Static method in class org.canova.api.berkeley.StringUtils
sum(double[]) - Static method in class org.canova.api.util.MathUtils: This returns the sum of the given array.
sumOfMeanDifferences(double[], double[]) - Static method in class org.canova.api.util.MathUtils: Used for calculating top part of simple regression for beta 1
sumOfMeanDifferencesOnePoint(double[]) - Static method in class org.canova.api.util.MathUtils: Used for calculating top part of simple regression for beta 1
sumOfProducts(double[]...) - Static method in class org.canova.api.util.MathUtils: This returns the sum of products for the given numbers.
sumOfSquares(double[]) - Static method in class org.canova.api.util.MathUtils: This returns the sum of squares for the given vector.
SVMLightInputFormat - Class in org.canova.api.formats.input.impl: SVMLight input format
SVMLightInputFormat() - Constructor for class org.canova.api.formats.input.impl.SVMLightInputFormat
SVMLightOutputFormat - Class in org.canova.api.formats.output.impl: Created by agibsonccc on 1/11/15.
SVMLightOutputFormat() - Constructor for class org.canova.api.formats.output.impl.SVMLightOutputFormat
SVMLightRecordReader - Class in org.canova.api.records.reader.impl: Adapted from the weka svmlight reader June 2015 - adapted to understand HDFS-style block splits
SVMLightRecordReader() - Constructor for class org.canova.api.records.reader.impl.SVMLightRecordReader
SVMLightRecordWriter - Class in org.canova.api.records.writer.impl: SVM Light Record Writer
SVMLightRecordWriter() - Constructor for class org.canova.api.records.writer.impl.SVMLightRecordWriter
SVMLightRecordWriter(File) - Constructor for class org.canova.api.records.writer.impl.SVMLightRecordWriter
SVMLightRecordWriter(File, boolean) - Constructor for class org.canova.api.records.writer.impl.SVMLightRecordWriter
SVMLightRecordWriter(Configuration) - Constructor for class org.canova.api.records.writer.impl.SVMLightRecordWriter
swap(int, int) - Method in class org.canova.api.berkeley.PriorityQueue
symbol - Variable in enum org.canova.api.util.StringUtils.TraditionalBinaryPrefix

T

Text - Class in org.canova.api.io.data: This class stores text using standard UTF8 encoding.
Text() - Constructor for class org.canova.api.io.data.Text
Text(String) - Constructor for class org.canova.api.io.data.Text: Construct from a string.
Text(Text) - Constructor for class org.canova.api.io.data.Text: Construct from another text.
Text(byte[]) - Constructor for class org.canova.api.io.data.Text: Construct from a byte array.
Text.Comparator - Class in org.canova.api.io.data: A WritableComparator optimized for Text keys.
tf(int) - Static method in class org.canova.api.util.MathUtils: Term frequency: 1+ log10(count)
tfidf(double, double) - Static method in class org.canova.api.util.MathUtils: Return td * idf
thread(Iterator<T>) - Static method in class org.canova.api.berkeley.Iterators: Executes calls to next() in a different thread
times(double[]) - Static method in class org.canova.api.util.MathUtils: This returns the product of all numbers in the given array.
toArray() - Method in class org.canova.api.util.MultiDimensionalSet: Returns an array containing all of the elements in this applyTransformToDestination.
toArray(T[]) - Method in class org.canova.api.util.MultiDimensionalSet: Returns an array containing all of the elements in this applyTransformToDestination; the runtime type of the returned array is that of the specified array.
toByteArray(Writable...) - Static method in class org.canova.api.io.WritableUtils: Convert writables to a byte array
toDecimal(String) - Static method in class org.canova.api.util.MathUtils: This will convert the given binary string to a decimal based integer
toLogSpace() - Method in class org.canova.api.berkeley.Counter
toRecord(double[]) - Static method in class org.canova.api.util.RecordUtils
toRecord(float[]) - Static method in class org.canova.api.util.RecordUtils
toString() - Method in class org.canova.api.berkeley.Counter: Returns a string representation with the keys ordered by decreasing counts.
toString(int) - Method in class org.canova.api.berkeley.Counter: Returns a string representation which includes no more than the maxKeysToPrint elements with largest counts.
toString(int, boolean) - Method in class org.canova.api.berkeley.Counter: Returns a string representation which includes no more than the maxKeysToPrint elements with largest counts and optionally prints one element per line.
toString(int) - Method in class org.canova.api.berkeley.CounterMap
toString() - Method in class org.canova.api.berkeley.CounterMap
toString(Collection<String>) - Method in class org.canova.api.berkeley.CounterMap
toString() - Method in class org.canova.api.berkeley.Pair
toString() - Method in class org.canova.api.berkeley.PriorityQueue: Returns a representation of the queue in decreasing priority order.
toString(int, boolean) - Method in class org.canova.api.berkeley.PriorityQueue: Returns a representation of the queue in decreasing priority order, displaying at most maxKeysToPrint elements and optionally printing one element per line.
toString() - Method in class org.canova.api.berkeley.Triple
toString() - Method in class org.canova.api.conf.Configuration.IntegerRanges
toString() - Method in class org.canova.api.conf.Configuration
toString() - Method in class org.canova.api.io.data.BooleanWritable
toString() - Method in class org.canova.api.io.data.ByteWritable
toString() - Method in class org.canova.api.io.data.DoubleWritable
toString() - Method in class org.canova.api.io.data.FloatWritable
toString() - Method in class org.canova.api.io.data.IntWritable
toString() - Method in class org.canova.api.io.data.LongWritable
toString() - Method in class org.canova.api.io.data.Text: Convert text back to string
toString() - Method in class org.canova.api.records.Buffer
toString(String) - Method in class org.canova.api.records.Buffer: Convert the byte buffer to a string an specific character encoding
toString() - Method in class org.canova.api.util.Index
toString() - Method in class org.canova.api.util.MultiDimensionalMap
toStringSortedByKeys() - Method in class org.canova.api.berkeley.Counter
toStringTabSeparated() - Method in class org.canova.api.berkeley.Counter
totalCount() - Method in class org.canova.api.berkeley.Counter: Finds the total of all counts in the counter.
totalCount() - Method in class org.canova.api.berkeley.CounterMap: Returns the total of all counts in sub-counters.
totalSize() - Method in class org.canova.api.berkeley.CounterMap: Returns the total number of (key, value) entries in the CounterMap (not their total counts).
Transform(Iterator<S>) - Constructor for class org.canova.api.berkeley.Iterators.Transform
transform(S) - Method in class org.canova.api.berkeley.Iterators.Transform
transform(Collection<Writable>) - Method in interface org.canova.api.vector.Vectorizer: Transform a record in to a vector
TransformingIterator(Iterator<I>, MyMethod<I, O>) - Constructor for class org.canova.api.berkeley.Iterators.TransformingIterator
TreeMapFactory() - Constructor for class org.canova.api.berkeley.MapFactory.TreeMapFactory
treeSet() - Static method in class org.canova.api.util.MultiDimensionalSet
trim(String, int) - Static method in class org.canova.api.berkeley.StringUtils: Returns s if it's at most maxWidth chars, otherwise chops right side to fit.
trim(Object, int) - Static method in class org.canova.api.berkeley.StringUtils
Triple<S,T,U> - Class in org.canova.api.berkeley
Triple(S, T, U) - Constructor for class org.canova.api.berkeley.Triple
truncate(int, int, int) - Static method in class org.canova.api.berkeley.StringUtils: This returns a string from decimal digit smallestDigit to decimal digit biggest digit.
truncate() - Method in class org.canova.api.records.Buffer: Change the capacity of the backing store to be the same as the current count of buffer.

U

unEscapeString(String) - Static method in class org.canova.api.util.StringUtils: Unescape commas in the string using the default escape char
unEscapeString(String, char, char) - Static method in class org.canova.api.util.StringUtils: Unescape charToEscape in the string with the escape char escapeChar
unEscapeString(String, char, char[]) - Static method in class org.canova.api.util.StringUtils
uniform(Random, double, double) - Static method in class org.canova.api.util.MathUtils: Generate a uniform random number from the given rng
union(Set<? extends T>, Set<? extends T>) - Static method in class org.canova.api.util.SetUtils
UnknownFormatException - Exception in org.canova.api.exceptions
UnknownFormatException() - Constructor for exception org.canova.api.exceptions.UnknownFormatException
UnknownFormatException(String) - Constructor for exception org.canova.api.exceptions.UnknownFormatException
UnknownFormatException(String, Throwable) - Constructor for exception org.canova.api.exceptions.UnknownFormatException
UnknownFormatException(Throwable) - Constructor for exception org.canova.api.exceptions.UnknownFormatException
UnknownFormatException(String, Throwable, boolean, boolean) - Constructor for exception org.canova.api.exceptions.UnknownFormatException
unsafeAdd(double, double) - Static method in class org.canova.api.berkeley.SloppyMath
unsafeSubtract(double, double) - Static method in class org.canova.api.berkeley.SloppyMath
unzipFileTo(String, String) - Static method in class org.canova.api.util.ArchiveUtils: Extracts files to the specified destination
uriToString(URI[]) - Static method in class org.canova.api.util.StringUtils
utf8Length(String) - Static method in class org.canova.api.io.data.Text: For the given string, returns the number of UTF-8 bytes required to encode the string.
Utils - Class in org.canova.api.records: Various utility functions for Hadooop record I/O runtime.

V

validateUTF8(byte[]) - Static method in class org.canova.api.io.data.Text: Check if a byte array contains valid utf-8
validateUTF8(byte[], int, int) - Static method in class org.canova.api.io.data.Text: Check to see if a byte array is valid utf-8
value - Variable in enum org.canova.api.util.StringUtils.TraditionalBinaryPrefix
valueOf(String) - Static method in enum org.canova.api.util.StringUtils.TraditionalBinaryPrefix: Returns the enum constant of this type with the specified name.
valueOf(char) - Static method in enum org.canova.api.util.StringUtils.TraditionalBinaryPrefix
values() - Method in class org.canova.api.util.MultiDimensionalMap: Returns a Collection view of the values contained in this map.
values() - Static method in enum org.canova.api.util.StringUtils.TraditionalBinaryPrefix: Returns an array containing the constants of this enum type, in the order they are declared.
Vectorizer<VECTOR_TYPE> - Interface in org.canova.api.vector: Vectorizer of a particular type.
Vectorizer.RecordCallBack - Interface in org.canova.api.vector: On record call back.
vectorLength(double[]) - Static method in class org.canova.api.util.MathUtils: Returns the vector length (sqrt(sum(x_i))

W

w_0(double[], double[], int) - Static method in class org.canova.api.util.MathUtils
w_1(double[], double[], int) - Static method in class org.canova.api.util.MathUtils
WeakHashMapFactory() - Constructor for class org.canova.api.berkeley.MapFactory.WeakHashMapFactory
weightsFor(List<Double>) - Static method in class org.canova.api.util.MathUtils: This returns the minimized loss values for a given vector.
weightsFor(double[]) - Static method in class org.canova.api.util.MathUtils: This returns the minimized loss values for a given vector.
Writable - Interface in org.canova.api.writable: A serializable object which implements a simple, efficient, serialization protocol, based on DataInput and DataOutput.
WritableComparable<T> - Interface in org.canova.api.io: A Writable which is also Comparable.
WritableComparator - Class in org.canova.api.io: A Comparator for WritableComparables.
WritableComparator(Class<? extends WritableComparable>) - Constructor for class org.canova.api.io.WritableComparator: Construct for a WritableComparable implementation.
WritableComparator(Class<? extends WritableComparable>, boolean) - Constructor for class org.canova.api.io.WritableComparator
WritableConverter - Interface in org.canova.api.io: Convert a writable to another writable (used for say: transitioning dates or categorical to numbers)
WritableConverterException - Exception in org.canova.api.io.converters: Writable converter exception represents an error for being unable to convert a writable
WritableConverterException() - Constructor for exception org.canova.api.io.converters.WritableConverterException
WritableConverterException(String) - Constructor for exception org.canova.api.io.converters.WritableConverterException
WritableConverterException(String, Throwable) - Constructor for exception org.canova.api.io.converters.WritableConverterException
WritableConverterException(Throwable) - Constructor for exception org.canova.api.io.converters.WritableConverterException
WritableConverterException(String, Throwable, boolean, boolean) - Constructor for exception org.canova.api.io.converters.WritableConverterException
Writables - Class in org.canova.api.writable: Util class for writable conversions
Writables() - Constructor for class org.canova.api.writable.Writables
writables(Collection<String>) - Static method in class org.canova.api.writable.Writables
WritableUtils - Class in org.canova.api.io
WritableUtils() - Constructor for class org.canova.api.io.WritableUtils
write(DataOutput) - Method in class org.canova.api.conf.Configuration
write(DataOutput) - Method in class org.canova.api.formats.input.BaseInputFormat
write(DataOutput) - Method in class org.canova.api.formats.input.impl.CSVInputFormat
write(DataOutput) - Method in class org.canova.api.formats.input.impl.LineInputFormat
write(DataOutput) - Method in class org.canova.api.io.data.BooleanWritable
write(DataOutput) - Method in class org.canova.api.io.data.ByteWritable
write(DataOutput) - Method in class org.canova.api.io.data.DoubleWritable
write(DataOutput) - Method in class org.canova.api.io.data.FloatWritable
write(DataOutput) - Method in class org.canova.api.io.data.IntWritable
write(DataOutput) - Method in class org.canova.api.io.data.LongWritable
write(DataOutput) - Method in class org.canova.api.io.data.Text: serialize write this object to out length uses zero-compressed encoding
write(DataInput, int) - Method in class org.canova.api.io.DataOutputBuffer: Writes bytes from a DataInput directly into the buffer.
write(Collection<Writable>) - Method in class org.canova.api.records.writer.impl.CSVRecordWriter
write(Collection<Writable>) - Method in class org.canova.api.records.writer.impl.FileRecordWriter
write(Collection<Writable>) - Method in class org.canova.api.records.writer.impl.LibSvmRecordWriter
write(Collection<Writable>) - Method in class org.canova.api.records.writer.impl.LineRecordWriter
write(Collection<Writable>) - Method in class org.canova.api.records.writer.impl.MatlabRecordWriter
write(Collection<Writable>) - Method in class org.canova.api.records.writer.impl.SVMLightRecordWriter
write(Collection<Writable>) - Method in interface org.canova.api.records.writer.RecordWriter: Write a record
write(DataOutput) - Method in class org.canova.api.split.FileSplit
write(DataOutput) - Method in class org.canova.api.split.InputStreamInputSplit
write(DataOutput) - Method in class org.canova.api.split.StringSplit
write(DataOutput) - Method in interface org.canova.api.writable.Writable: Serialize the fields of this object to out.
writeCompressedByteArray(DataOutput, byte[]) - Static method in class org.canova.api.io.WritableUtils
writeCompressedString(DataOutput, String) - Static method in class org.canova.api.io.WritableUtils
writeCompressedStringArray(DataOutput, String[]) - Static method in class org.canova.api.io.WritableUtils
writeEnum(DataOutput, Enum<?>) - Static method in class org.canova.api.io.WritableUtils: writes String value of enum to DataOutput.
writeString(DataOutput, String) - Static method in class org.canova.api.io.data.Text: Write a UTF8 encoded string to out
writeString(DataOutput, String) - Static method in class org.canova.api.io.WritableUtils
writeStringArray(DataOutput, String[]) - Static method in class org.canova.api.io.WritableUtils
writeTo(OutputStream) - Method in class org.canova.api.io.DataOutputBuffer: Write to a file stream
writeTo - Variable in class org.canova.api.records.writer.impl.FileRecordWriter
writeVInt(DataOutput, int) - Static method in class org.canova.api.io.WritableUtils: Serializes an integer to a binary stream with zero-compressed encoding.
writeVInt(DataOutput, int) - Static method in class org.canova.api.records.Utils: Serializes an int to a binary stream with zero-compressed encoding.
writeVLong(DataOutput, long) - Static method in class org.canova.api.io.WritableUtils: Serializes a long to a binary stream with zero-compressed encoding.
writeVLong(DataOutput, long) - Static method in class org.canova.api.records.Utils: Serializes a long to a binary stream with zero-compressed encoding.
writeXml(OutputStream) - Method in class org.canova.api.conf.Configuration: Write out the non-default properties in this configuration to the give OutputStream.

X

xVals(double[]) - Static method in class org.canova.api.util.MathUtils: This returns the x values of the given vector.

Y

yVals(double[]) - Static method in class org.canova.api.util.MathUtils: This returns the odd indexed values for the given vector

Z

zip(Iterator<S>, Iterator<T>) - Static method in class org.canova.api.berkeley.Iterators

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