A B C D E F G H I K M O P Q R S T U V W
All Classes All Packages

A

addErrorMessage(ErrorMessageResponse.ErrorMessage) - Method in class org.molgenis.web.ErrorMessageResponse

addErrorMessages(List<ErrorMessageResponse.ErrorMessage>) - Method in class org.molgenis.web.ErrorMessageResponse

addFormatters(FormatterRegistry) - Method in class org.molgenis.web.rsql.RsqlConfig

afterPropertiesSet() - Method in class org.molgenis.web.converter.GsonFactoryBean

AggregateQueryRsql - Class in org.molgenis.web.rsql

Create MOLGENIS aggregation query from RSQL node.

AggregateQueryRsql(Node) - Constructor for class org.molgenis.web.rsql.AggregateQueryRsql

AggregateQueryRsqlConverter - Class in org.molgenis.web.rsql

AggregateQueryRsqlConverter(RSQLParser) - Constructor for class org.molgenis.web.rsql.AggregateQueryRsqlConverter

AggregateQueryRsqlVisitor - Class in org.molgenis.web.rsql

RSQLVisitor implementation for molgenis Query.

AggregateQueryRsqlVisitor(EntityType, Query<Entity>) - Constructor for class org.molgenis.web.rsql.AggregateQueryRsqlVisitor

APP_PREFIX - Static variable in class org.molgenis.web.bootstrap.PluginPopulator

AutoValueTypeAdapterFactory - Class in org.molgenis.web.converter

AutoValueTypeAdapterFactory() - Constructor for class org.molgenis.web.converter.AutoValueTypeAdapterFactory

B

BaseHttpMessageConverter<T> - Class in org.molgenis.web.converter

BaseHttpMessageConverter() - Constructor for class org.molgenis.web.converter.BaseHttpMessageConverter

BaseHttpMessageConverter(MediaType) - Constructor for class org.molgenis.web.converter.BaseHttpMessageConverter

BaseHttpMessageConverter(MediaType...) - Constructor for class org.molgenis.web.converter.BaseHttpMessageConverter

C

contains(Predicate<MenuNode>) - Method in class org.molgenis.web.menu.model.Menu

contains(Predicate<MenuNode>) - Method in class org.molgenis.web.menu.model.MenuItem

contains(Predicate<MenuNode>) - Method in interface org.molgenis.web.menu.model.MenuNode

Checks if this Menu node contains a menu node matching the given predicate

convert(String) - Method in class org.molgenis.web.rsql.AggregateQueryRsqlConverter

convert(String) - Method in class org.molgenis.web.rsql.QueryRsqlConverter

create(Gson, TypeToken<T>) - Method in class org.molgenis.web.converter.AutoValueTypeAdapterFactory

create(String) - Static method in class org.molgenis.web.ErrorMessageResponse

create(String, String) - Static method in class org.molgenis.web.ErrorMessageResponse

create(String, String) - Static method in class org.molgenis.web.menu.model.MenuItem

create(String, String, String) - Static method in class org.molgenis.web.menu.model.MenuItem

create(String, String, List<MenuNode>) - Static method in class org.molgenis.web.menu.model.Menu

createAggregateQuery(EntityType, Query<Entity>) - Method in class org.molgenis.web.rsql.AggregateQueryRsql

createQuery(String, EntityType) - Method in class org.molgenis.web.rsql.MolgenisRSQL

createQuery(EntityType) - Method in class org.molgenis.web.rsql.QueryRsql

CsvHttpMessageConverter - Class in org.molgenis.web.converter

Converts an EntityCollection to comma separated values

CsvHttpMessageConverter() - Constructor for class org.molgenis.web.converter.CsvHttpMessageConverter

D

DEFAULT_CHARSET - Static variable in class org.molgenis.web.converter.BaseHttpMessageConverter

E

EntitySerializer - Class in org.molgenis.web.support

Serializer for concrete Entity subclasses.

EntitySerializer() - Constructor for class org.molgenis.web.support.EntitySerializer

equals(Object) - Method in class org.molgenis.web.ErrorMessageResponse

equals(Object) - Method in class org.molgenis.web.ErrorMessageResponse.ErrorMessage

ErrorMessage(String) - Constructor for class org.molgenis.web.ErrorMessageResponse.ErrorMessage

ErrorMessage(String, String) - Constructor for class org.molgenis.web.ErrorMessageResponse.ErrorMessage

ErrorMessageResponse - Class in org.molgenis.web

ErrorMessageResponse() - Constructor for class org.molgenis.web.ErrorMessageResponse

ErrorMessageResponse(List<ErrorMessageResponse.ErrorMessage>) - Constructor for class org.molgenis.web.ErrorMessageResponse

ErrorMessageResponse(ErrorMessageResponse.ErrorMessage) - Constructor for class org.molgenis.web.ErrorMessageResponse

ErrorMessageResponse.ErrorMessage - Class in org.molgenis.web

F

FallbackExceptionHandler - Class in org.molgenis.web.exception

FallbackExceptionHandler() - Constructor for class org.molgenis.web.exception.FallbackExceptionHandler

FallbackLocaleSupplier - Interface in org.molgenis.web.i18n

FallbackLocaleSupplierImpl - Class in org.molgenis.web.i18n

filter(Predicate<MenuNode>) - Method in class org.molgenis.web.menu.model.Menu

filter(Predicate<MenuNode>) - Method in class org.molgenis.web.menu.model.MenuItem

filter(Predicate<MenuNode>) - Method in interface org.molgenis.web.menu.model.MenuNode

Filters all Menu nodes by applying the predicate to their items.

findMenu(String) - Method in class org.molgenis.web.menu.model.Menu

findMenuItemPath(String) - Method in interface org.molgenis.web.menu.MenuReaderService

Find path leading up to a MenuItem.

findMenuItemPath(String) - Method in class org.molgenis.web.menu.MenuReaderServiceImpl

firstItem() - Method in class org.molgenis.web.menu.model.Menu

firstItem() - Method in class org.molgenis.web.menu.model.MenuItem

firstItem() - Method in interface org.molgenis.web.menu.model.MenuNode

Finds the first menu item in this menu node.

G

get() - Method in interface org.molgenis.web.i18n.FallbackLocaleSupplier

get() - Method in class org.molgenis.web.i18n.FallbackLocaleSupplierImpl

getCharset(HttpHeaders) - Method in class org.molgenis.web.converter.BaseHttpMessageConverter

getCode() - Method in class org.molgenis.web.ErrorMessageResponse.ErrorMessage

getErrors() - Method in class org.molgenis.web.ErrorMessageResponse

getId() - Method in interface org.molgenis.web.menu.model.MenuNode

getId() - Method in class org.molgenis.web.PluginController

Returns the unique id of the plugin

getItems() - Method in class org.molgenis.web.menu.model.Menu

getLabel() - Method in interface org.molgenis.web.menu.model.MenuNode

getMenu() - Method in interface org.molgenis.web.menu.MenuReaderService

Retrieves the menu, filtered to show only the part you're permitted to view.

getMenu() - Method in class org.molgenis.web.menu.MenuReaderServiceImpl

getMessage() - Method in class org.molgenis.web.ErrorMessageResponse.ErrorMessage

getObject() - Method in class org.molgenis.web.converter.GsonFactoryBean

Return the created Gson instance.

getObjectType() - Method in class org.molgenis.web.converter.GsonFactoryBean

getParams() - Method in class org.molgenis.web.menu.model.MenuItem

getPath(String) - Method in class org.molgenis.web.menu.model.Menu

getPath(String) - Method in class org.molgenis.web.menu.model.MenuItem

getPath(String) - Method in interface org.molgenis.web.menu.model.MenuNode

Returns the path from this menu node to the menu with given ID.

getPluginSettings() - Method in class org.molgenis.web.PluginController

Returns an entity containing settings for a plugin or null if no settings exist.

getUri() - Method in class org.molgenis.web.PluginController

Returns the base URI of the plugin

getUrl() - Method in class org.molgenis.web.menu.model.MenuItem

GlobalControllerExceptionHandler - Class in org.molgenis.web.exception

GlobalControllerExceptionHandler() - Constructor for class org.molgenis.web.exception.GlobalControllerExceptionHandler

GsonConfig - Class in org.molgenis.web.converter

GsonConfig() - Constructor for class org.molgenis.web.converter.GsonConfig

gsonFactoryBean() - Method in class org.molgenis.web.converter.GsonConfig

GsonFactoryBean - Class in org.molgenis.web.converter

A FactoryBean for creating a Google Gson 2.x Gson instance.

GsonFactoryBean() - Constructor for class org.molgenis.web.converter.GsonFactoryBean

gsonHttpMessageConverter() - Method in class org.molgenis.web.converter.GsonConfig

H

handleException(Exception, HandlerMethod) - Method in class org.molgenis.web.exception.FallbackExceptionHandler

handleException(DataAlreadyExistsException, HandlerMethod) - Method in class org.molgenis.web.exception.GlobalControllerExceptionHandler

handleException(UnknownDataException, HandlerMethod) - Method in class org.molgenis.web.exception.GlobalControllerExceptionHandler

handleException(BadRequestException, HandlerMethod) - Method in class org.molgenis.web.exception.GlobalControllerExceptionHandler

handleException(CodedRuntimeException, HandlerMethod) - Method in class org.molgenis.web.exception.GlobalControllerExceptionHandler

handleException(ForbiddenException, HandlerMethod) - Method in class org.molgenis.web.exception.GlobalControllerExceptionHandler

handleMaxUploadSizeExceededException(Exception, HttpServletRequest) - Method in class org.molgenis.web.exception.SpringExceptionHandler

handlePermissionDeniedException(PermissionDeniedException, HandlerMethod) - Method in class org.molgenis.web.exception.GlobalControllerExceptionHandler

handleSpringException(Exception, HandlerMethod) - Method in class org.molgenis.web.exception.SpringExceptionHandler

handleSpringExceptionNotFound(Exception, HttpServletRequest) - Method in class org.molgenis.web.exception.SpringExceptionHandler

hashCode() - Method in class org.molgenis.web.ErrorMessageResponse.ErrorMessage

hashCode() - Method in class org.molgenis.web.ErrorMessageResponse

HttpLocaleResolver - Class in org.molgenis.web.i18n

I

isMenu() - Method in class org.molgenis.web.menu.model.Menu

isMenu() - Method in class org.molgenis.web.menu.model.MenuItem

isMenu() - Method in interface org.molgenis.web.menu.model.MenuNode

isSingleton() - Method in class org.molgenis.web.converter.GsonFactoryBean

K

KEY_APP_SETTINGS - Static variable in class org.molgenis.web.PluginAttributes

KEY_AUTHENTICATION_OIDC_CLIENTS - Static variable in class org.molgenis.web.PluginAttributes

KEY_AUTHENTICATION_SIGN_UP - Static variable in class org.molgenis.web.PluginAttributes

KEY_CONTEXT_URL - Static variable in class org.molgenis.web.PluginAttributes

KEY_ENVIRONMENT - Static variable in class org.molgenis.web.PluginAttributes

environment: development, production

KEY_GSON - Static variable in class org.molgenis.web.PluginAttributes

KEY_I18N - Static variable in class org.molgenis.web.PluginAttributes

KEY_PLUGIN_SETTINGS - Static variable in class org.molgenis.web.PluginAttributes

KEY_RESOURCE_FINGERPRINT_REGISTRY - Static variable in class org.molgenis.web.PluginAttributes

KEY_THEME_FINGERPRINT_REGISTRY - Static variable in class org.molgenis.web.PluginAttributes

M

Menu - Class in org.molgenis.web.menu.model

Menu grouping a list of child items.

Menu() - Constructor for class org.molgenis.web.menu.model.Menu

MenuItem - Class in org.molgenis.web.menu.model

A menu item.

MenuItem() - Constructor for class org.molgenis.web.menu.model.MenuItem

MenuNode - Interface in org.molgenis.web.menu.model

Interface for the menu nodes in the menu tree.

MenuReaderService - Interface in org.molgenis.web.menu

MenuReaderServiceImpl - Class in org.molgenis.web.menu

MenuReaderServiceImpl(AppSettings, Gson, UserPermissionEvaluator) - Constructor for class org.molgenis.web.menu.MenuReaderServiceImpl

menuTypeAdapterFactory() - Method in class org.molgenis.web.converter.GsonConfig

MenuUtils - Class in org.molgenis.web.menu

MolgenisGsonHttpMessageConverter - Class in org.molgenis.web.converter

Subclassed customization of GsonHttpMessageConverter that works around https://jira.spring.io/browse/SPR-16461

MolgenisGsonHttpMessageConverter(Gson) - Constructor for class org.molgenis.web.converter.MolgenisGsonHttpMessageConverter

MolgenisRSQL - Class in org.molgenis.web.rsql

Rsql/fiql parser

MolgenisRSQL(RSQLParser) - Constructor for class org.molgenis.web.rsql.MolgenisRSQL

MolgenisRSQLVisitor - Class in org.molgenis.web.rsql

RSQLVisitor implementation that creates Query objects for an RSQL tree.

MolgenisRSQLVisitor(EntityType) - Constructor for class org.molgenis.web.rsql.MolgenisRSQLVisitor

O

org.molgenis.web - package org.molgenis.web

org.molgenis.web.bootstrap - package org.molgenis.web.bootstrap

org.molgenis.web.converter - package org.molgenis.web.converter

org.molgenis.web.exception - package org.molgenis.web.exception

org.molgenis.web.i18n - package org.molgenis.web.i18n

org.molgenis.web.menu - package org.molgenis.web.menu

org.molgenis.web.menu.model - package org.molgenis.web.menu.model

org.molgenis.web.rsql - package org.molgenis.web.rsql

org.molgenis.web.support - package org.molgenis.web.support

P

parse(String, Attribute) - Method in class org.molgenis.web.rsql.RSQLValueParser

PLUGIN_URI_PREFIX - Static variable in class org.molgenis.web.PluginController

PluginAttributes - Class in org.molgenis.web

Model attributes used in plugin views

PluginController - Class in org.molgenis.web

Abstract base class for all MOLGENIS plugin controllers

PluginController(String) - Constructor for class org.molgenis.web.PluginController

PluginInterceptor - Class in org.molgenis.web

Interceptor that adds default model objects to all plugin requests that return a view.

PluginInterceptor(MenuReaderService, UserPermissionEvaluator) - Constructor for class org.molgenis.web.PluginInterceptor

PluginPopulator - Class in org.molgenis.web.bootstrap

populate(ApplicationContext) - Method in class org.molgenis.web.bootstrap.PluginPopulator

postHandle(HttpServletRequest, HttpServletResponse, Object, ModelAndView) - Method in class org.molgenis.web.PluginInterceptor

preHandle(HttpServletRequest, HttpServletResponse, Object) - Method in class org.molgenis.web.PluginInterceptor

Q

QueryRsql - Class in org.molgenis.web.rsql

Create MOLGENIS Query from RSQL node based on entity meta data.

QueryRsql(Node) - Constructor for class org.molgenis.web.rsql.QueryRsql

QueryRsqlConverter - Class in org.molgenis.web.rsql

QueryRsqlConverter(RSQLParser) - Constructor for class org.molgenis.web.rsql.QueryRsqlConverter

R

readDefaultMenuValueFromClasspath() - Static method in class org.molgenis.web.menu.MenuUtils

Reads the default menu contents from the classpath.

readInternal(Class<? extends EntityCollection>, HttpInputMessage) - Method in class org.molgenis.web.converter.CsvHttpMessageConverter

registerTypeAdapterFactory(TypeAdapterFactory) - Method in class org.molgenis.web.converter.GsonFactoryBean

registerTypeHierarchyAdapter(Class<?>, Object) - Method in class org.molgenis.web.converter.GsonFactoryBean

resolveLocale(String) - Method in interface org.molgenis.web.i18n.UserLocaleResolver

Resolve the current locale via the given username.

resolveLocale(String) - Method in class org.molgenis.web.i18n.UserLocaleResolverImpl

resolveLocale(HttpServletRequest) - Method in class org.molgenis.web.i18n.HttpLocaleResolver

RsqlConfig - Class in org.molgenis.web.rsql

RsqlConfig() - Constructor for class org.molgenis.web.rsql.RsqlConfig

rsqlParser() - Method in class org.molgenis.web.rsql.RsqlConfig

rsqlQueryConverter() - Method in class org.molgenis.web.rsql.RsqlConfig

RSQLValueParser - Class in org.molgenis.web.rsql

Converts RSQL value symbols to the relevant data type.

RSQLValueParser() - Constructor for class org.molgenis.web.rsql.RSQLValueParser

S

serialize(Entity, Type, JsonSerializationContext) - Method in class org.molgenis.web.support.EntitySerializer

setDateFormatPattern(String) - Method in class org.molgenis.web.converter.GsonFactoryBean

Define the date/time format with a SimpleDateFormat-style pattern.

setDisableHtmlEscaping(boolean) - Method in class org.molgenis.web.converter.GsonFactoryBean

Whether to use the GsonBuilder.disableHtmlEscaping() when writing JSON.

setLocale(HttpServletRequest, HttpServletResponse, Locale) - Method in class org.molgenis.web.i18n.HttpLocaleResolver

setPrettyPrinting(boolean) - Method in class org.molgenis.web.converter.GsonFactoryBean

Whether to use the GsonBuilder.setPrettyPrinting() when writing JSON.

setRegisterJavaTimeConverters(boolean) - Method in class org.molgenis.web.converter.GsonFactoryBean

Indicates if the java 8 date time Converters should be registered with Gson.

setSerializeNulls(boolean) - Method in class org.molgenis.web.converter.GsonFactoryBean

Whether to use the GsonBuilder.serializeNulls() option when writing JSON.

SpringExceptionHandler - Class in org.molgenis.web.exception

SpringExceptionHandler() - Constructor for class org.molgenis.web.exception.SpringExceptionHandler

supports(Class<?>) - Method in class org.molgenis.web.converter.CsvHttpMessageConverter

T

toString() - Method in class org.molgenis.web.ErrorMessageResponse.ErrorMessage

toString() - Method in class org.molgenis.web.ErrorMessageResponse

U

UserLocaleResolver - Interface in org.molgenis.web.i18n

UserLocaleResolverImpl - Class in org.molgenis.web.i18n

V

validateHandler(Object) - Method in class org.molgenis.web.PluginInterceptor

visit(AndNode) - Method in class org.molgenis.web.rsql.AggregateQueryRsqlVisitor

visit(AndNode) - Method in class org.molgenis.web.rsql.MolgenisRSQLVisitor

visit(ComparisonNode) - Method in class org.molgenis.web.rsql.AggregateQueryRsqlVisitor

visit(ComparisonNode) - Method in class org.molgenis.web.rsql.MolgenisRSQLVisitor

visit(OrNode) - Method in class org.molgenis.web.rsql.AggregateQueryRsqlVisitor

visit(OrNode) - Method in class org.molgenis.web.rsql.MolgenisRSQLVisitor

W

WebL10nConfig - Class in org.molgenis.web

WebL10nConfig() - Constructor for class org.molgenis.web.WebL10nConfig

writeInternal(Object, Type, Writer) - Method in class org.molgenis.web.converter.MolgenisGsonHttpMessageConverter

writeInternal(EntityCollection, HttpOutputMessage) - Method in class org.molgenis.web.converter.CsvHttpMessageConverter

A B C D E F G H I K M O P Q R S T U V W
All Classes All Packages