org.molgenis.semanticmapper.service.impl

Class MappingServiceImpl

java.lang.Object

org.molgenis.semanticmapper.service.impl.MappingServiceImpl

All Implemented Interfaces:

MappingService

@PreAuthorize(value="hasAnyRole(\'ROLE_SU\')")
public class MappingServiceImpl
extends Object
implements MappingService

Field Summary

Fields

Modifier and Type	Field and Description
static int	MAPPING_BATCH_SIZE

Constructor Summary

Constructors

Constructor and Description
MappingServiceImpl(DataService dataService, AlgorithmService algorithmService, MappingProjectRepository mappingProjectRepository, org.molgenis.data.security.permission.PermissionSystemService permissionSystemService, AttributeFactory attrMetaFactory, EntityManager entityManager)

Method Summary

Modifier and Type	Method and Description
MappingProject	addMappingProject(String projectName, String target) Creates a new MappingProject
long	applyMappings(String mappingProjectId, String entityTypeId, Boolean addSourceAttribute, String packageId, String label, org.molgenis.jobs.Progress progress) Applies all mappings in a MappingTarget
MappingProject	cloneMappingProject(String mappingProjectId) Clones a MappingProject.
MappingProject	cloneMappingProject(String mappingProjectId, String clonedMappingProjectName) Clones a MappingProject.
void	deleteMappingProject(String mappingProjectId) Deletes a MappingProject
List<MappingProject>	getAllMappingProjects() Retrieves all MappingProjects.
Stream<EntityType>	getCompatibleEntityTypes(EntityType target) Public for testability
MappingProject	getMappingProject(String identifier) Retrieves a MappingProject from the repository.
void	updateMappingProject(MappingProject mappingProject) Updates a MappingProject in the repository.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

MAPPING_BATCH_SIZE

public static final int MAPPING_BATCH_SIZE

See Also:

Constant Field Values

Constructor Detail

MappingServiceImpl

public MappingServiceImpl(DataService dataService,
                          AlgorithmService algorithmService,
                          MappingProjectRepository mappingProjectRepository,
                          org.molgenis.data.security.permission.PermissionSystemService permissionSystemService,
                          AttributeFactory attrMetaFactory,
                          EntityManager entityManager)

Method Detail

addMappingProject

@Transactional
public MappingProject addMappingProject(String projectName,
                                                       String target)

Description copied from interface: MappingService

Creates a new MappingProject

Specified by:

addMappingProject in interface MappingService

target - name of the first target entity

deleteMappingProject

@Transactional
public void deleteMappingProject(String mappingProjectId)

Description copied from interface: MappingService

Deletes a MappingProject

Specified by:

deleteMappingProject in interface MappingService

Parameters:

mappingProjectId - id of the MappingProject to delete

cloneMappingProject

@Transactional
public MappingProject cloneMappingProject(String mappingProjectId)

Description copied from interface: MappingService

Clones a MappingProject. Deep copies all related mappings. Automatically generates name for cloned MappingProject.

Specified by:

cloneMappingProject in interface MappingService

Parameters:

mappingProjectId - id of the MappingProject to clone

Returns:

cloned MappingProject

cloneMappingProject

@Transactional
public MappingProject cloneMappingProject(String mappingProjectId,
                                                         String clonedMappingProjectName)

Description copied from interface: MappingService

Clones a MappingProject. Deep copies all related mappings.

Specified by:

cloneMappingProject in interface MappingService

Parameters:

mappingProjectId - id of the MappingProject to clone

clonedMappingProjectName - name of the cloned MappingProject

Returns:

cloned MappingProject

getAllMappingProjects

public List<MappingProject> getAllMappingProjects()

Description copied from interface: MappingService

Retrieves all MappingProjects.

Specified by:

getAllMappingProjects in interface MappingService

Returns:

list of all MappingProjects.

updateMappingProject

@Transactional
public void updateMappingProject(MappingProject mappingProject)

Description copied from interface: MappingService

Updates a MappingProject in the repository. All MappingTargets, EntityMappings and AttributeMappings are updated.

Specified by:

updateMappingProject in interface MappingService

Parameters:

mappingProject - the MappingProject to update.

getMappingProject

public MappingProject getMappingProject(String identifier)

Description copied from interface: MappingService

Retrieves a MappingProject from the repository.

Specified by:

getMappingProject in interface MappingService

Parameters:

identifier - ID of the MappingProject

Returns:

the retrieved MappingProject

applyMappings

@Transactional
public long applyMappings(String mappingProjectId,
                                         String entityTypeId,
                                         Boolean addSourceAttribute,
                                         String packageId,
                                         String label,
                                         org.molgenis.jobs.Progress progress)

Description copied from interface: MappingService

Applies all mappings in a MappingTarget

Specified by:

applyMappings in interface MappingService

Parameters:

mappingProjectId - the id of the MappingProject whose mappings are applied

entityTypeId - the name of the entity to map to

addSourceAttribute - boolean indicating if the 'source' attribute should be added to the target repository

packageId - the id of the destination Package, ignored when mapping to existing EntityType

label - label of the target EntityType, ignored when mapping to existing EntityType

progress - progress of the mapping

Returns:

the total amount of entities mapped

getCompatibleEntityTypes

public Stream<EntityType> getCompatibleEntityTypes(EntityType target)

Public for testability

Specified by:

getCompatibleEntityTypes in interface MappingService

Parameters:

target - EntityType of the mapping target

Returns:

Stream of compatible EntityTypes