org.molgenis.gavin.job.input.model

Class VcfVariant

java.lang.Object

org.molgenis.gavin.job.input.model.VcfVariant

All Implemented Interfaces:

Variant

public abstract class VcfVariant
extends Object
implements Variant

Constructor Summary

Constructors

Constructor and Description
VcfVariant()

Method Summary

Modifier and Type	Method and Description
static VcfVariant	create(String chrom, long pos, String id, String ref, String alt)
abstract String	getAlt()
abstract String	getChrom()
abstract String	getId()
LineType	getLineType()
abstract long	getPos()
abstract String	getRef()
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

VcfVariant

public VcfVariant()

Method Detail

getChrom

public abstract String getChrom()

getPos

public abstract long getPos()

getId

public abstract String getId()

getRef

public abstract String getRef()

getAlt

public abstract String getAlt()

getLineType

public LineType getLineType()

Specified by:

getLineType in interface Variant

toString

public String toString()

Overrides:

toString in class Object

create

public static VcfVariant create(String chrom,
                                long pos,
                                String id,
                                String ref,
                                String alt)