org.molgenis.gavin.job.input.model

Class CaddVariant

java.lang.Object

org.molgenis.gavin.job.input.model.CaddVariant

All Implemented Interfaces:

Variant

public abstract class CaddVariant
extends Object
implements Variant

Constructor Summary

Constructors

Constructor and Description
CaddVariant()

Method Summary

Modifier and Type	Method and Description
static CaddVariant	create(String chrom, long pos, String ref, String alt, Double rawScore, Double phred)
abstract String	getAlt()
abstract String	getChrom()
String	getInfo()
LineType	getLineType()
abstract Double	getPhred()
abstract long	getPos()
abstract Double	getRawScore()
abstract String	getRef()
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

CaddVariant

public CaddVariant()

Method Detail

getChrom

public abstract String getChrom()

getPos

public abstract long getPos()

getRef

public abstract String getRef()

getAlt

public abstract String getAlt()

getRawScore

@Nullable
public abstract Double getRawScore()

getPhred

@Nullable
public abstract Double getPhred()

getInfo

public String getInfo()

getLineType

public LineType getLineType()

Specified by:

getLineType in interface Variant

create

public static CaddVariant create(String chrom,
                                 long pos,
                                 String ref,
                                 String alt,
                                 Double rawScore,
                                 Double phred)

toString

public String toString()

Overrides:

toString in class Object