org.molgenis.gavin.job

Class GavinJobFactory

java.lang.Object

org.molgenis.gavin.job.GavinJobFactory

@Component
public class GavinJobFactory
extends Object

Constructor Summary

Constructors

Constructor and Description

GavinJobFactory(DataService dataService, org.springframework.transaction.PlatformTransactionManager transactionManager, org.springframework.security.core.userdetails.UserDetailsService userDetailsService, JobExecutionUpdater jobExecutionUpdater, org.springframework.mail.MailSender mailSender, FileStore fileStore, RepositoryAnnotator cadd, RepositoryAnnotator exac, RepositoryAnnotator snpEff, EffectBasedAnnotator gavin, MenuReaderService menuReaderService, Parser parser, AnnotatorRunner annotatorRunner)

Method Summary

Modifier and Type	Method and Description
GavinJob	createJob(GavinJobExecution gavinJobExecution)
GavinJobExecution	findGavinJobExecution(String jobIdentifier) Retrieves a GavinJobExecution for anyone who has the identifier, without checking their permissions.
List<String>	getAnnotatorsWithMissingResources()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GavinJobFactory

@Autowired
public GavinJobFactory(DataService dataService,
                                  org.springframework.transaction.PlatformTransactionManager transactionManager,
                                  org.springframework.security.core.userdetails.UserDetailsService userDetailsService,
                                  JobExecutionUpdater jobExecutionUpdater,
                                  org.springframework.mail.MailSender mailSender,
                                  FileStore fileStore,
                                  RepositoryAnnotator cadd,
                                  RepositoryAnnotator exac,
                                  RepositoryAnnotator snpEff,
                                  EffectBasedAnnotator gavin,
                                  MenuReaderService menuReaderService,
                                  Parser parser,
                                  AnnotatorRunner annotatorRunner)

Method Detail

createJob

public GavinJob createJob(GavinJobExecution gavinJobExecution)

getAnnotatorsWithMissingResources

public List<String> getAnnotatorsWithMissingResources()

findGavinJobExecution

public GavinJobExecution findGavinJobExecution(String jobIdentifier)
                                        throws JobNotFoundException

Retrieves a GavinJobExecution for anyone who has the identifier, without checking their permissions.

Parameters:

jobIdentifier - the identifier of the GavinJobExecution

Returns:

GavinJobExecution with the specified identifier, if it exists

Throws:

JobNotFoundException - if no GavinJobExecution with the specified identifier exists.