org.molgenis.gavin.job

Class AnnotatorRunner

java.lang.Object

org.molgenis.gavin.job.AnnotatorRunner

@Component
public class AnnotatorRunner
extends Object

Constructor Summary

Constructors

Constructor and Description
AnnotatorRunner(VcfAttributes vcfAttributes, EntityTypeFactory entityTypeFactory, AttributeFactory attributeFactory, EffectStructureConverter effectStructureConverter)

Method Summary

Modifier and Type	Method and Description
void	runAnnotator(RepositoryAnnotator annotator, File inputFile, File outputFile, boolean update)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AnnotatorRunner

@Autowired
public AnnotatorRunner(VcfAttributes vcfAttributes,
                                  EntityTypeFactory entityTypeFactory,
                                  AttributeFactory attributeFactory,
                                  EffectStructureConverter effectStructureConverter)

Method Detail

runAnnotator

public void runAnnotator(RepositoryAnnotator annotator,
                         File inputFile,
                         File outputFile,
                         boolean update)
                  throws IOException,
                         MolgenisInvalidFormatException

Throws:

IOException

MolgenisInvalidFormatException