org.molgenis.data.semanticsearch.service.impl

Class OntologyTagServiceImpl

java.lang.Object

org.molgenis.data.semanticsearch.service.impl.OntologyTagServiceImpl

All Implemented Interfaces:

OntologyTagService, TagService<OntologyTerm,Ontology>

public class OntologyTagServiceImpl
extends Object
implements OntologyTagService

Service to tag metadata with ontology terms.

Constructor Summary

Constructors

Constructor and Description
OntologyTagServiceImpl(DataService dataService, OntologyService ontologyService, TagRepository tagRepository, IdGenerator idGenerator)

Method Summary

Modifier and Type	Method and Description
void	addAttributeTag(EntityMetaData entityMetaData, Tag<AttributeMetaData,OntologyTerm,Ontology> tag) Tags an attribute.
OntologyTag	addAttributeTag(String entity, String attribute, String relationIRI, List<String> ontologyTermIRIs)
void	addEntityTag(Tag<EntityMetaData,OntologyTerm,Ontology> tag) Tags an entity.
Entity	findAttributeEntity(String entityName, String attributeName)
Entity	getTagEntity(Tag<?,OntologyTerm,Ontology> tag)
com.google.common.collect.Multimap<Relation,OntologyTerm>	getTagsForAttribute(EntityMetaData entityMetaData, AttributeMetaData attributeMetaData) Retrieves all tags for an attribute, and groups them by relation
Iterable<Tag<EntityMetaData,LabeledResource,LabeledResource>>	getTagsForEntity(EntityMetaData entityMetaData) Retrieves all tags for an entity.
Iterable<Tag<Package,OntologyTerm,Ontology>>	getTagsForPackage(Package p) Retrieves all tags for a package
void	removeAllTagsFromEntity(String entityName) Removes all tags for a given entity
void	removeAttributeTag(EntityMetaData entityMetaData, Tag<AttributeMetaData,OntologyTerm,Ontology> removeTag) Removes attribute tag
void	removeAttributeTag(String entity, String attribute, String relationIRI, String ontologyTermIRI)
void	removeEntityTag(Tag<EntityMetaData,OntologyTerm,Ontology> tag) Removes an entity tag.
Map<String,OntologyTag>	tagAttributesInEntity(String entity, Map<AttributeMetaData,OntologyTerm> tags)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

OntologyTagServiceImpl

public OntologyTagServiceImpl(DataService dataService,
                              OntologyService ontologyService,
                              TagRepository tagRepository,
                              IdGenerator idGenerator)

Method Detail

removeAttributeTag

public void removeAttributeTag(String entity,
                               String attribute,
                               String relationIRI,
                               String ontologyTermIRI)

Specified by:

removeAttributeTag in interface OntologyTagService

removeAttributeTag

public void removeAttributeTag(EntityMetaData entityMetaData,
                               Tag<AttributeMetaData,OntologyTerm,Ontology> removeTag)

Description copied from interface: TagService

Removes attribute tag

Specified by:

removeAttributeTag in interface TagService<OntologyTerm,Ontology>

Parameters:

entityMetaData - the entity the tagged attribute sits on

removeTag - the tag to remove

getTagsForAttribute

public com.google.common.collect.Multimap<Relation,OntologyTerm> getTagsForAttribute(EntityMetaData entityMetaData,
                                                                                     AttributeMetaData attributeMetaData)

Description copied from interface: TagService

Retrieves all tags for an attribute, and groups them by relation

Specified by:

getTagsForAttribute in interface TagService<OntologyTerm,Ontology>

getTagsForPackage

public Iterable<Tag<Package,OntologyTerm,Ontology>> getTagsForPackage(Package p)

Description copied from interface: TagService

Retrieves all tags for a package

Specified by:

getTagsForPackage in interface TagService<OntologyTerm,Ontology>

addAttributeTag

public void addAttributeTag(EntityMetaData entityMetaData,
                            Tag<AttributeMetaData,OntologyTerm,Ontology> tag)

Description copied from interface: TagService

Tags an attribute.

Specified by:

addAttributeTag in interface TagService<OntologyTerm,Ontology>

Parameters:

entityMetaData - the entity the tagged attribute sits on

tag - the tag to add

addAttributeTag

public OntologyTag addAttributeTag(String entity,
                                   String attribute,
                                   String relationIRI,
                                   List<String> ontologyTermIRIs)

Specified by:

addAttributeTag in interface OntologyTagService

getTagEntity

public Entity getTagEntity(Tag<?,OntologyTerm,Ontology> tag)

removeAllTagsFromEntity

public void removeAllTagsFromEntity(String entityName)

Description copied from interface: TagService

Removes all tags for a given entity

Specified by:

removeAllTagsFromEntity in interface TagService<OntologyTerm,Ontology>

Parameters:

entityName - the name of the entity for which all tags should be removed

tagAttributesInEntity

public Map<String,OntologyTag> tagAttributesInEntity(String entity,
                                                     Map<AttributeMetaData,OntologyTerm> tags)

Specified by:

tagAttributesInEntity in interface OntologyTagService

addEntityTag

public void addEntityTag(Tag<EntityMetaData,OntologyTerm,Ontology> tag)

Description copied from interface: TagService

Tags an entity.

Specified by:

addEntityTag in interface TagService<OntologyTerm,Ontology>

Parameters:

tag - the tag to add

removeEntityTag

public void removeEntityTag(Tag<EntityMetaData,OntologyTerm,Ontology> tag)

Description copied from interface: TagService

Removes an entity tag.

Specified by:

removeEntityTag in interface TagService<OntologyTerm,Ontology>

Parameters:

tag - the tag to remove

getTagsForEntity

public Iterable<Tag<EntityMetaData,LabeledResource,LabeledResource>> getTagsForEntity(EntityMetaData entityMetaData)

Description copied from interface: TagService

Retrieves all tags for an entity.

Specified by:

getTagsForEntity in interface TagService<OntologyTerm,Ontology>

findAttributeEntity

public Entity findAttributeEntity(String entityName,
                                  String attributeName)