A C D E F G H I L M N O P R S T U V W
All Classes All Packages

A

AbstractRowLevelSecurityRepositoryDecorator<E extends Entity> - Class in org.molgenis.data.security.owned

RepositoryDecorator that works on EntityTypes that are row-level secured.

AbstractRowLevelSecurityRepositoryDecorator(Repository<E>, MutableAclService) - Constructor for class org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator

AbstractRowLevelSecurityRepositoryDecorator.Action - Enum in org.molgenis.data.security.owned

The operation that is being performed on this repository.

ACCEPTED - org.molgenis.data.security.auth.MembershipInvitationMetadata.Status

AclAlreadyExistsException - Exception in org.molgenis.data.security.exception

AclAlreadyExistsException(String, String) - Constructor for exception org.molgenis.data.security.exception.AclAlreadyExistsException

AclClassAlreadyExistsException - Exception in org.molgenis.data.security.exception

AclClassAlreadyExistsException(String) - Constructor for exception org.molgenis.data.security.exception.AclClassAlreadyExistsException

AclNotFoundException - Exception in org.molgenis.data.security.exception

AclNotFoundException(String) - Constructor for exception org.molgenis.data.security.exception.AclNotFoundException

ACTIVATIONCODE - Static variable in class org.molgenis.data.security.auth.UserMetadata

ACTIVE - Static variable in class org.molgenis.data.security.auth.UserMetadata

add(E) - Method in class org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator

add(Stream<E>) - Method in class org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator

add(Stream<Entity>) - Method in class org.molgenis.data.security.owned.OwnershipDecorator

add(Stream<Entity>) - Method in class org.molgenis.data.security.RepositorySecurityDecorator

add(Stream<Attribute>) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

add(Stream<Package>) - Method in class org.molgenis.data.security.auth.GroupPackageRepositoryDecorator

add(Stream<Package>) - Method in class org.molgenis.data.security.meta.PackageRepositorySecurityDecorator

add(Stream<Role>) - Method in class org.molgenis.data.security.auth.RoleRepositoryDecorator

add(Stream<RoleMembership>) - Method in class org.molgenis.data.security.auth.RoleMembershipDecorator

add(Stream<User>) - Method in class org.molgenis.data.security.auth.UserRepositoryDecorator

add(Entity) - Method in class org.molgenis.data.security.owned.OwnershipDecorator

add(Entity) - Method in class org.molgenis.data.security.RepositorySecurityDecorator

add(Attribute) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

add(Package) - Method in class org.molgenis.data.security.auth.GroupPackageRepositoryDecorator

add(Package) - Method in class org.molgenis.data.security.meta.PackageRepositorySecurityDecorator

add(Role) - Method in class org.molgenis.data.security.auth.RoleRepositoryDecorator

add(RoleMembership) - Method in class org.molgenis.data.security.auth.RoleMembershipDecorator

add(User) - Method in class org.molgenis.data.security.auth.UserRepositoryDecorator

ADD_DATA - org.molgenis.data.security.EntityTypePermission

ADD_ENTITY_TYPE - org.molgenis.data.security.PackagePermission

ADD_MEMBERSHIP - org.molgenis.data.security.auth.GroupPermission

ADD_PACKAGE - org.molgenis.data.security.PackagePermission

addMember(Group, User, Role) - Method in class org.molgenis.data.security.auth.GroupService

Add member to group.

ADDRESS - Static variable in class org.molgenis.data.security.auth.UserMetadata

addSystemEntityType(SystemEntityType) - Method in class org.molgenis.data.security.SystemEntityTypeRegistryImpl

addType(String) - Method in interface org.molgenis.data.security.permission.PermissionService

Add a Type to the database

addType(String) - Method in class org.molgenis.data.security.permission.PermissionServiceDecorator

addType(String) - Method in class org.molgenis.data.security.permission.PermissionServiceImpl

addUserToRole(String, String) - Method in interface org.molgenis.data.security.permission.RoleMembershipService

addUserToRole(String, String) - Method in class org.molgenis.data.security.permission.RoleMembershipServiceImpl

addUserToRole(User, Role) - Method in interface org.molgenis.data.security.permission.RoleMembershipService

addUserToRole(User, Role) - Method in class org.molgenis.data.security.permission.RoleMembershipServiceImpl

AFFILIATION - Static variable in class org.molgenis.data.security.auth.UserMetadata

afterCommitTransaction(String) - Method in class org.molgenis.data.security.auth.CachedRoleHierarchyImpl

aggregate(AggregateQuery) - Method in class org.molgenis.data.security.aggregation.AggregateAnonymizerRepositoryDecorator

aggregate(AggregateQuery) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

aggregate(AggregateQuery) - Method in class org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator

aggregate(AggregateQuery) - Method in class org.molgenis.data.security.RepositorySecurityDecorator

AGGREGATE_ANONYMIZATION_VALUE - Static variable in class org.molgenis.data.security.aggregation.AnonymizedAggregateResult

AGGREGATE_DATA - org.molgenis.data.security.EntityTypePermission

AggregateAnonymizer - Interface in org.molgenis.data.security.aggregation

Filter counts smaller the a threshold value

AggregateAnonymizerImpl - Class in org.molgenis.data.security.aggregation

AggregateAnonymizerImpl() - Constructor for class org.molgenis.data.security.aggregation.AggregateAnonymizerImpl

AggregateAnonymizerRepositoryDecorator<E extends Entity> - Class in org.molgenis.data.security.aggregation

Repository decorator that anonymizes aggregate query results based on application anonymization settings.

AggregateAnonymizerRepositoryDecorator(Repository<E>, AggregateAnonymizer, AppSettings) - Constructor for class org.molgenis.data.security.aggregation.AggregateAnonymizerRepositoryDecorator

anonymize(AggregateResult, int) - Method in interface org.molgenis.data.security.aggregation.AggregateAnonymizer

anonymize(AggregateResult, int) - Method in class org.molgenis.data.security.aggregation.AggregateAnonymizerImpl

AnonymizedAggregateResult - Class in org.molgenis.data.security.aggregation

ANONYMOUS - Static variable in class org.molgenis.data.security.permission.UserRoleTools

AttributeRepositorySecurityDecorator - Class in org.molgenis.data.security.meta

Decorator for the attribute repository: - filters requested entities based on the entity permissions of the current user.

AttributeRepositorySecurityDecorator(Repository<Attribute>, SystemEntityTypeRegistry, UserPermissionEvaluator) - Constructor for class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

AUTHORITY_EDITOR - Static variable in class org.molgenis.data.security.auth.GroupService

AUTHORITY_MANAGER - Static variable in class org.molgenis.data.security.auth.GroupService

AUTHORITY_VIEWER - Static variable in class org.molgenis.data.security.auth.GroupService

C

CachedRoleHierarchy - Interface in org.molgenis.data.security.auth

CachedRoleHierarchyImpl - Class in org.molgenis.data.security.auth

CachedRoleHierarchyImpl(DataserviceRoleHierarchy, TransactionManager) - Constructor for class org.molgenis.data.security.auth.CachedRoleHierarchyImpl

CHANGE_PASSWORD - Static variable in class org.molgenis.data.security.auth.UserMetadata

checkEntityExists(ObjectIdentity) - Method in class org.molgenis.data.security.permission.EntityHelper

checkEntityTypeExists(String) - Method in class org.molgenis.data.security.permission.EntityHelper

checkIsNotSystem(String) - Method in class org.molgenis.data.security.permission.EntityHelper

checkRoleExists(String) - Method in class org.molgenis.data.security.permission.UserRoleTools

checkUserExists(String) - Method in class org.molgenis.data.security.permission.UserRoleTools

CircularRoleHierarchyException - Exception in org.molgenis.data.security.exception

Thrown when the 'includes' field of a Role contains a circular Role hierarchy.

CircularRoleHierarchyException(Role) - Constructor for exception org.molgenis.data.security.exception.CircularRoleHierarchyException

CITY - Static variable in class org.molgenis.data.security.auth.UserMetadata

close() - Method in class org.molgenis.data.security.RepositorySecurityDecorator

count() - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

count() - Method in class org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator

count() - Method in class org.molgenis.data.security.RepositorySecurityDecorator

count(Query<E>) - Method in class org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator

count(Query<Entity>) - Method in class org.molgenis.data.security.RepositorySecurityDecorator

count(Query<Attribute>) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

COUNT - org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator.Action

COUNT - Static variable in class org.molgenis.data.security.permission.PermissionSetUtils

COUNT_DATA - org.molgenis.data.security.EntityTypePermission

COUNTRY - Static variable in class org.molgenis.data.security.auth.UserMetadata

create(String, String) - Static method in class org.molgenis.data.security.permission.model.LabelledObject

create(String, String, String) - Static method in class org.molgenis.data.security.permission.model.LabelledType

create(String, String, String, String, String) - Static method in class org.molgenis.data.security.permission.model.LabelledObjectIdentity

create(List<InheritedUserPermissionsResult>, InheritedAclPermissionsResult) - Static method in class org.molgenis.data.security.permission.inheritance.model.InheritedPermissionsResult

create(GroupValue) - Method in class org.molgenis.data.security.auth.GroupFactory

create(RoleValue) - Method in class org.molgenis.data.security.auth.RoleFactory

create(Acl, PermissionSet, List<InheritedUserPermissionsResult>, InheritedAclPermissionsResult) - Static method in class org.molgenis.data.security.permission.inheritance.model.InheritedAclPermissionsResult

create(ObjectIdentity, Sid, PermissionSet) - Static method in class org.molgenis.data.security.permission.model.Permission

create(Sid, LabelledObjectIdentity, PermissionSet, Set<LabelledPermission>) - Static method in class org.molgenis.data.security.permission.model.LabelledPermission

create(Sid, PermissionSet, List<InheritedUserPermissionsResult>) - Static method in class org.molgenis.data.security.permission.inheritance.model.InheritedUserPermissionsResult

CREATE - org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator.Action

createAcl(E) - Method in class org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator

createAcl(Entity) - Method in class org.molgenis.data.security.owned.RowLevelSecurityRepositoryDecorator

createAcl(EntityType) - Method in class org.molgenis.data.security.meta.EntityTypeRepositorySecurityDecorator

createAcl(Package) - Method in class org.molgenis.data.security.meta.PackageRepositorySecurityDecorator

createAcl(ObjectIdentity) - Method in interface org.molgenis.data.security.permission.PermissionService

Creates an access control list for the given object identity

createAcl(ObjectIdentity) - Method in class org.molgenis.data.security.permission.PermissionServiceDecorator

createAcl(ObjectIdentity) - Method in class org.molgenis.data.security.permission.PermissionServiceImpl

createDecoratedRepository(Repository<Entity>) - Method in class org.molgenis.data.security.owned.RowLevelSecurityRepositoryDecoratorFactory

createDecoratedRepository(Repository<Entity>, Map<String, Object>) - Method in class org.molgenis.data.security.owned.OwnershipDecoratorFactory

createDecoratedRepository(Repository<Role>) - Method in class org.molgenis.data.security.auth.RoleRepositoryDecoratorFactory

createDecoratedRepository(Repository<RoleMembership>) - Method in class org.molgenis.data.security.auth.RoleMembershipRepositoryDecoratorFactory

createDecoratedRepository(Repository<User>) - Method in class org.molgenis.data.security.auth.UserRepositoryDecoratorFactory

createGroup(Package) - Method in interface org.molgenis.data.security.auth.GroupPackageService

createGroup(Package) - Method in class org.molgenis.data.security.GroupPackageServiceImpl

createGroups(List<Package>) - Method in interface org.molgenis.data.security.auth.GroupPackageService

createGroups(List<Package>) - Method in class org.molgenis.data.security.GroupPackageServiceImpl

createPermission(Permission) - Method in interface org.molgenis.data.security.permission.PermissionService

Creates a permission for a user on an object identity

createPermission(Permission) - Method in class org.molgenis.data.security.permission.PermissionServiceDecorator

createPermission(Permission) - Method in class org.molgenis.data.security.permission.PermissionServiceImpl

createPermissions(Set<Permission>) - Method in interface org.molgenis.data.security.permission.PermissionService

Creates permissions for a user on an object identity

createPermissions(Set<Permission>) - Method in class org.molgenis.data.security.permission.PermissionServiceDecorator

createPermissions(Set<Permission>) - Method in class org.molgenis.data.security.permission.PermissionServiceImpl

CREATIONDATE - Static variable in class org.molgenis.data.security.auth.TokenMetadata

CURRENT - org.molgenis.data.security.auth.RoleMembership.Status

D

DataPermissionConfig - Class in org.molgenis.data.security.permission

DataPermissionConfig(PermissionRegistry) - Constructor for class org.molgenis.data.security.permission.DataPermissionConfig

DataSecurityConfig - Class in org.molgenis.data.security.config

DataSecurityConfig() - Constructor for class org.molgenis.data.security.config.DataSecurityConfig

dataSecurityMessageSource() - Method in class org.molgenis.data.security.config.DataSecurityConfig

DataserviceRoleHierarchy - Class in org.molgenis.data.security

DataserviceRoleHierarchy(DataService) - Constructor for class org.molgenis.data.security.DataserviceRoleHierarchy

DECLINE_REASON - Static variable in class org.molgenis.data.security.auth.MembershipInvitationMetadata

DECLINED - org.molgenis.data.security.auth.MembershipInvitationMetadata.Status

DEFAULT_ROLES - Static variable in class org.molgenis.data.security.auth.GroupService

delete(E) - Method in class org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator

delete(Stream<E>) - Method in class org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator

delete(Stream<Entity>) - Method in class org.molgenis.data.security.RepositorySecurityDecorator

delete(Stream<Attribute>) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

delete(Stream<Package>) - Method in class org.molgenis.data.security.auth.GroupPackageRepositoryDecorator

delete(Stream<Role>) - Method in class org.molgenis.data.security.auth.RoleRepositoryDecorator

delete(Stream<User>) - Method in class org.molgenis.data.security.auth.UserRepositoryDecorator

delete(Entity) - Method in class org.molgenis.data.security.RepositorySecurityDecorator

delete(Attribute) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

delete(Package) - Method in class org.molgenis.data.security.auth.GroupPackageRepositoryDecorator

delete(Role) - Method in class org.molgenis.data.security.auth.RoleRepositoryDecorator

delete(User) - Method in class org.molgenis.data.security.auth.UserRepositoryDecorator

DELETE - org.molgenis.data.security.EntityPermission

DELETE - org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator.Action

DELETE_DATA - org.molgenis.data.security.EntityTypePermission

DELETE_METADATA - org.molgenis.data.security.EntityTypePermission

deleteAcl(E) - Method in class org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator

deleteAcl(Object) - Method in class org.molgenis.data.security.meta.EntityTypeRepositorySecurityDecorator

deleteAcl(Object) - Method in class org.molgenis.data.security.meta.PackageRepositorySecurityDecorator

deleteAcl(Object) - Method in class org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator

deleteAcl(Object) - Method in class org.molgenis.data.security.owned.RowLevelSecurityRepositoryDecorator

deleteAcl(Entity) - Method in class org.molgenis.data.security.owned.RowLevelSecurityRepositoryDecorator

deleteAcl(EntityType) - Method in class org.molgenis.data.security.meta.EntityTypeRepositorySecurityDecorator

deleteAcl(Package) - Method in class org.molgenis.data.security.meta.PackageRepositorySecurityDecorator

deleteAll() - Method in class org.molgenis.data.security.auth.GroupPackageRepositoryDecorator

deleteAll() - Method in class org.molgenis.data.security.auth.RoleRepositoryDecorator

deleteAll() - Method in class org.molgenis.data.security.auth.UserRepositoryDecorator

deleteAll() - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

deleteAll() - Method in class org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator

deleteAll() - Method in class org.molgenis.data.security.RepositorySecurityDecorator

deleteAll(Stream<Object>) - Method in class org.molgenis.data.security.auth.GroupPackageRepositoryDecorator

deleteAll(Stream<Object>) - Method in class org.molgenis.data.security.auth.RoleRepositoryDecorator

deleteAll(Stream<Object>) - Method in class org.molgenis.data.security.auth.UserRepositoryDecorator

deleteAll(Stream<Object>) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

deleteAll(Stream<Object>) - Method in class org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator

deleteAll(Stream<Object>) - Method in class org.molgenis.data.security.RepositorySecurityDecorator

deleteById(Object) - Method in class org.molgenis.data.security.auth.GroupPackageRepositoryDecorator

deleteById(Object) - Method in class org.molgenis.data.security.auth.RoleRepositoryDecorator

deleteById(Object) - Method in class org.molgenis.data.security.auth.UserRepositoryDecorator

deleteById(Object) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

deleteById(Object) - Method in class org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator

deleteById(Object) - Method in class org.molgenis.data.security.RepositorySecurityDecorator

deleteGroup(String) - Method in class org.molgenis.data.security.auth.GroupService

deleteGroup(Package) - Method in interface org.molgenis.data.security.auth.GroupPackageService

deleteGroup(Package) - Method in class org.molgenis.data.security.GroupPackageServiceImpl

deletePermission(Sid, ObjectIdentity) - Method in interface org.molgenis.data.security.permission.PermissionService

Deletes a existing permission for a user on an object identity

deletePermission(Sid, ObjectIdentity) - Method in class org.molgenis.data.security.permission.PermissionServiceDecorator

deletePermission(Sid, ObjectIdentity) - Method in class org.molgenis.data.security.permission.PermissionServiceImpl

deleteType(String) - Method in interface org.molgenis.data.security.permission.PermissionService

Removes a Type from the database

deleteType(String) - Method in class org.molgenis.data.security.permission.PermissionServiceDecorator

deleteType(String) - Method in class org.molgenis.data.security.permission.PermissionServiceImpl

DEPARTMENT - Static variable in class org.molgenis.data.security.auth.UserMetadata

DESCRIPTION - Static variable in class org.molgenis.data.security.auth.GroupMetadata

DESCRIPTION - Static variable in class org.molgenis.data.security.auth.RoleMetadata

DESCRIPTION - Static variable in class org.molgenis.data.security.auth.TokenMetadata

doCleanupAfterCompletion(String) - Method in class org.molgenis.data.security.auth.CachedRoleHierarchyImpl

DuplicatePermissionException - Exception in org.molgenis.data.security.exception

DuplicatePermissionException(ObjectIdentity, Sid) - Constructor for exception org.molgenis.data.security.exception.DuplicatePermissionException

E

EDITOR - Static variable in class org.molgenis.data.security.auth.GroupService

EMAIL - Static variable in class org.molgenis.data.security.auth.MembershipInvitationMetadata

EMAIL - Static variable in class org.molgenis.data.security.auth.UserMetadata

ENTITY_PREFIX - Static variable in class org.molgenis.data.security.permission.EntityHelper

ENTITY_TYPE - Static variable in class org.molgenis.data.security.EntityTypeIdentity

EntityHelper - Class in org.molgenis.data.security.permission

EntityHelper(DataService) - Constructor for class org.molgenis.data.security.permission.EntityHelper

EntityIdentity - Class in org.molgenis.data.security

EntityIdentity(String, Object) - Constructor for class org.molgenis.data.security.EntityIdentity

EntityIdentity(Entity) - Constructor for class org.molgenis.data.security.EntityIdentity

EntityIdentityUtils - Class in org.molgenis.data.security

EntityPermission - Enum in org.molgenis.data.security

Permission to perform an action on an entity instance.

EntityPermissionDeniedException - Exception in org.molgenis.data.security.exception

EntityPermissionDeniedException(EntityPermission, Entity) - Constructor for exception org.molgenis.data.security.exception.EntityPermissionDeniedException

EntityTypeIdentity - Class in org.molgenis.data.security

EntityTypeIdentity(String) - Constructor for class org.molgenis.data.security.EntityTypeIdentity

EntityTypeIdentity(EntityType) - Constructor for class org.molgenis.data.security.EntityTypeIdentity

EntityTypePermission - Enum in org.molgenis.data.security

Permission to perform an action on an EntityType.

EntityTypePermissionDeniedException - Exception in org.molgenis.data.security.exception

EntityTypePermissionDeniedException(EntityTypePermission, String) - Constructor for exception org.molgenis.data.security.exception.EntityTypePermissionDeniedException

EntityTypePermissionDeniedException(EntityTypePermission, EntityType) - Constructor for exception org.molgenis.data.security.exception.EntityTypePermissionDeniedException

EntityTypeRepositorySecurityDecorator - Class in org.molgenis.data.security.meta

Decorator for the entity type repository: - filters requested entities based on the permissions of the current user - validates permissions when adding, updating or deleting entity types

EntityTypeRepositorySecurityDecorator(Repository<EntityType>, SystemEntityTypeRegistry, UserPermissionEvaluator, MutableAclService, MutableAclClassService, DataService) - Constructor for class org.molgenis.data.security.meta.EntityTypeRepositorySecurityDecorator

equals(Object) - Method in class org.molgenis.data.security.aggregation.AnonymizedAggregateResult

ERROR_CODE - Static variable in exception org.molgenis.data.security.exception.GroupPermissionDeniedException

exists(ObjectIdentity, Sid) - Method in interface org.molgenis.data.security.permission.PermissionService

Checks if a there is a permission in the system for the combination of a sid and an objectIdentity

exists(ObjectIdentity, Sid) - Method in class org.molgenis.data.security.permission.PermissionServiceDecorator

exists(ObjectIdentity, Sid) - Method in class org.molgenis.data.security.permission.PermissionServiceImpl

EXPIRATIONDATE - Static variable in class org.molgenis.data.security.auth.TokenMetadata

EXPIRED - org.molgenis.data.security.auth.MembershipInvitationMetadata.Status

F

FAX - Static variable in class org.molgenis.data.security.auth.UserMetadata

findAll(Stream<Object>) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

findAll(Stream<Object>) - Method in class org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator

findAll(Stream<Object>) - Method in class org.molgenis.data.security.RepositorySecurityDecorator

findAll(Stream<Object>, Fetch) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

findAll(Stream<Object>, Fetch) - Method in class org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator

findAll(Stream<Object>, Fetch) - Method in class org.molgenis.data.security.RepositorySecurityDecorator

findAll(Query<E>) - Method in class org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator

findAll(Query<Entity>) - Method in class org.molgenis.data.security.RepositorySecurityDecorator

findAll(Query<Attribute>) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

findOne(Query<E>) - Method in class org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator

findOne(Query<Entity>) - Method in class org.molgenis.data.security.RepositorySecurityDecorator

findOne(Query<Attribute>) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

findOneById(Object) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

findOneById(Object) - Method in class org.molgenis.data.security.meta.PackageRepositorySecurityDecorator

findOneById(Object) - Method in class org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator

findOneById(Object) - Method in class org.molgenis.data.security.RepositorySecurityDecorator

findOneById(Object, Fetch) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

findOneById(Object, Fetch) - Method in class org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator

findOneById(Object, Fetch) - Method in class org.molgenis.data.security.RepositorySecurityDecorator

FIRSTNAME - Static variable in class org.molgenis.data.security.auth.UserMetadata

forEachBatched(Fetch, Consumer<List<E>>, int) - Method in class org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator

forEachBatched(Fetch, Consumer<List<Entity>>, int) - Method in class org.molgenis.data.security.RepositorySecurityDecorator

forEachBatched(Fetch, Consumer<List<Attribute>>, int) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

FROM - Static variable in class org.molgenis.data.security.auth.MembershipInvitationMetadata

FROM - Static variable in class org.molgenis.data.security.auth.RoleMembershipMetadata

FUTURE - org.molgenis.data.security.auth.RoleMembership.Status

G

getAcl() - Method in class org.molgenis.data.security.permission.inheritance.model.InheritedAclPermissionsResult

getActivationCode() - Method in class org.molgenis.data.security.auth.User

getAddress() - Method in class org.molgenis.data.security.auth.User

getAffiliation() - Method in class org.molgenis.data.security.auth.User

getAllGrantedAuthorityInclusions() - Method in class org.molgenis.data.security.DataserviceRoleHierarchy

getAnonymizationThreshold() - Method in class org.molgenis.data.security.aggregation.AnonymizedAggregateResult

getCity() - Method in class org.molgenis.data.security.auth.User

getCountry() - Method in class org.molgenis.data.security.auth.User

getCreationDate() - Method in class org.molgenis.data.security.auth.Token

getDeclineReason() - Method in class org.molgenis.data.security.auth.MembershipInvitation

getDefaultDescription() - Method in enum org.molgenis.data.security.auth.GroupPermission

getDefaultDescription() - Method in enum org.molgenis.data.security.EntityPermission

getDefaultDescription() - Method in enum org.molgenis.data.security.EntityTypePermission

getDefaultDescription() - Method in enum org.molgenis.data.security.PackagePermission

getDepartment() - Method in class org.molgenis.data.security.auth.User

getDependencies() - Method in class org.molgenis.data.security.auth.GroupMetadata

getDescription() - Method in class org.molgenis.data.security.auth.Group

getDescription() - Method in class org.molgenis.data.security.auth.Role

getDescription() - Method in class org.molgenis.data.security.auth.Token

getDescription() - Method in class org.molgenis.data.security.owned.OwnershipDecoratorFactory

getDescription(String) - Method in class org.molgenis.data.security.auth.Group

getDescription(String) - Method in class org.molgenis.data.security.auth.Role

getEmail() - Method in class org.molgenis.data.security.auth.MembershipInvitation

getEmail() - Method in class org.molgenis.data.security.auth.User

getEntityType() - Method in class org.molgenis.data.security.permission.model.LabelledType

getEntityTypeId() - Method in class org.molgenis.data.security.permission.model.LabelledObjectIdentity

getErrorCode() - Method in exception org.molgenis.data.security.exception.EntityTypePermissionDeniedException

getExpirationDate() - Method in class org.molgenis.data.security.auth.PasswordResetToken

getExpirationDate() - Method in class org.molgenis.data.security.auth.Token

getFax() - Method in class org.molgenis.data.security.auth.User

getFirstName() - Method in class org.molgenis.data.security.auth.User

getFrom() - Method in class org.molgenis.data.security.auth.MembershipInvitation

getFrom() - Method in class org.molgenis.data.security.auth.RoleMembership

getGoogleAccountId() - Method in class org.molgenis.data.security.auth.User

getGroup() - Method in class org.molgenis.data.security.auth.Role

getGroup(String) - Method in class org.molgenis.data.security.auth.GroupService

Get the group entity by its unique name.

getGroups() - Method in class org.molgenis.data.security.auth.GroupService

getId() - Method in class org.molgenis.data.security.auth.Group

getId() - Method in class org.molgenis.data.security.auth.MembershipInvitation

getId() - Method in class org.molgenis.data.security.auth.PasswordResetToken

getId() - Method in class org.molgenis.data.security.auth.Role

getId() - Method in class org.molgenis.data.security.auth.RoleMembership

getId() - Method in class org.molgenis.data.security.auth.Token

getId() - Method in class org.molgenis.data.security.auth.User

getId() - Method in class org.molgenis.data.security.owned.OwnershipDecoratorFactory

getId() - Method in class org.molgenis.data.security.permission.model.LabelledObject

getId() - Method in class org.molgenis.data.security.permission.model.LabelledType

getIdentifierLabel() - Method in class org.molgenis.data.security.permission.model.LabelledObjectIdentity

getIncludes() - Method in class org.molgenis.data.security.auth.Role

getInheritedPermissions() - Method in class org.molgenis.data.security.permission.model.LabelledPermission

getInheritedPermissions(Acl, Sid) - Method in class org.molgenis.data.security.permission.inheritance.PermissionInheritanceResolver

getInheritedUserPermissionsResult() - Method in class org.molgenis.data.security.permission.inheritance.model.InheritedUserPermissionsResult

getInvitationText() - Method in class org.molgenis.data.security.auth.MembershipInvitation

getInvitedBy() - Method in class org.molgenis.data.security.auth.MembershipInvitation

getIssued() - Method in class org.molgenis.data.security.auth.MembershipInvitation

getLabel() - Method in class org.molgenis.data.security.auth.Group

getLabel() - Method in class org.molgenis.data.security.auth.Role

getLabel() - Method in class org.molgenis.data.security.owned.OwnershipDecoratorFactory

getLabel() - Method in class org.molgenis.data.security.permission.model.LabelledObject

getLabel() - Method in class org.molgenis.data.security.permission.model.LabelledType

getLabel(String) - Method in class org.molgenis.data.security.auth.Group

getLabel(String) - Method in class org.molgenis.data.security.auth.Role

getLabel(String) - Method in class org.molgenis.data.security.permission.EntityHelper

getLabel(String, String) - Method in class org.molgenis.data.security.permission.EntityHelper

getLabelledObjectIdentity() - Method in class org.molgenis.data.security.permission.model.LabelledPermission

getLabelledObjectIdentity(ObjectIdentity) - Method in class org.molgenis.data.security.permission.EntityHelper

getLabelledTypes() - Method in interface org.molgenis.data.security.permission.PermissionService

Retrieves the types that are available in the system

getLabelledTypes() - Method in class org.molgenis.data.security.permission.PermissionServiceDecorator

getLabelledTypes() - Method in class org.molgenis.data.security.permission.PermissionServiceImpl

getLanguageCode() - Method in class org.molgenis.data.security.auth.User

getLastName() - Method in class org.molgenis.data.security.auth.User

getLastUpdate() - Method in class org.molgenis.data.security.auth.MembershipInvitation

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.auth.RoleMembershipValidationException

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.exception.AclAlreadyExistsException

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.exception.AclClassAlreadyExistsException

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.exception.AclNotFoundException

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.exception.CircularRoleHierarchyException

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.exception.DuplicatePermissionException

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.exception.EntityPermissionDeniedException

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.exception.EntityTypePermissionDeniedException

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.exception.GroupNameNotAvailableException

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.exception.GroupPackageDowngradeException

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.exception.GroupPermissionDeniedException

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.exception.InsufficientInheritancePermissionsException

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.exception.InsufficientPermissionsException

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.exception.InvalidTypeIdException

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.exception.IsAlreadyMemberException

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.exception.NotAValidGroupRoleException

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.exception.NullPackageNotSuException

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.exception.NullParentPackageNotSuException

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.exception.PackagePermissionDeniedException

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.exception.ParentPackagePermissionDeniedException

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.exception.PermissionNotSuitableException

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.exception.ReadPermissionDeniedException

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.exception.SidPermissionException

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.exception.SuperUserPermissionsException

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.exception.SystemMetadataModificationException

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.exception.SystemRlsModificationException

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.exception.UnknownAceException

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.exception.UnknownRoleException

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.exception.UnknownTypeException

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.NoWritablePackageException

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.user.InvalidEmailAddressException

getLocalizedMessageArguments() - Method in exception org.molgenis.data.security.user.UnknownUserException

getMemberships(Collection<Role>) - Method in interface org.molgenis.data.security.permission.RoleMembershipService

getMemberships(Collection<Role>) - Method in class org.molgenis.data.security.permission.RoleMembershipServiceImpl

getMessage() - Method in exception org.molgenis.data.security.auth.RoleMembershipValidationException

getMessage() - Method in exception org.molgenis.data.security.exception.AclAlreadyExistsException

getMessage() - Method in exception org.molgenis.data.security.exception.AclClassAlreadyExistsException

getMessage() - Method in exception org.molgenis.data.security.exception.AclNotFoundException

getMessage() - Method in exception org.molgenis.data.security.exception.CircularRoleHierarchyException

getMessage() - Method in exception org.molgenis.data.security.exception.DuplicatePermissionException

getMessage() - Method in exception org.molgenis.data.security.exception.EntityPermissionDeniedException

getMessage() - Method in exception org.molgenis.data.security.exception.EntityTypePermissionDeniedException

getMessage() - Method in exception org.molgenis.data.security.exception.GroupNameNotAvailableException

getMessage() - Method in exception org.molgenis.data.security.exception.GroupPackageDowngradeException

getMessage() - Method in exception org.molgenis.data.security.exception.GroupPermissionDeniedException

getMessage() - Method in exception org.molgenis.data.security.exception.InsufficientPermissionsException

getMessage() - Method in exception org.molgenis.data.security.exception.InvalidTypeIdException

getMessage() - Method in exception org.molgenis.data.security.exception.IsAlreadyMemberException

getMessage() - Method in exception org.molgenis.data.security.exception.NotAValidGroupRoleException

getMessage() - Method in exception org.molgenis.data.security.exception.PackagePermissionDeniedException

getMessage() - Method in exception org.molgenis.data.security.exception.ParentPackagePermissionDeniedException

getMessage() - Method in exception org.molgenis.data.security.exception.PermissionNotSuitableException

getMessage() - Method in exception org.molgenis.data.security.exception.ReadPermissionDeniedException

getMessage() - Method in exception org.molgenis.data.security.exception.SidPermissionException

getMessage() - Method in exception org.molgenis.data.security.exception.SuperUserPermissionsException

getMessage() - Method in exception org.molgenis.data.security.exception.SystemRlsModificationException

getMessage() - Method in exception org.molgenis.data.security.exception.UnknownAceException

getMessage() - Method in exception org.molgenis.data.security.exception.UnknownRoleException

getMessage() - Method in exception org.molgenis.data.security.exception.UnknownTypeException

getMessage() - Method in exception org.molgenis.data.security.NoWritablePackageException

getMessage() - Method in exception org.molgenis.data.security.user.UnknownUserException

getMiddleNames() - Method in class org.molgenis.data.security.auth.User

getName() - Method in class org.molgenis.data.security.auth.Group

getName() - Method in class org.molgenis.data.security.auth.Role

getName(Sid) - Static method in class org.molgenis.data.security.permission.UserRoleTools

getObjectIdentity() - Method in class org.molgenis.data.security.permission.model.Permission

getObjectIdentity(String, String) - Method in class org.molgenis.data.security.permission.EntityHelper

getObjects(String, int, int) - Method in interface org.molgenis.data.security.permission.PermissionService

Retrieves the objects of a type in the system

getObjects(String, int, int) - Method in class org.molgenis.data.security.permission.PermissionServiceDecorator

getObjects(String, int, int) - Method in class org.molgenis.data.security.permission.PermissionServiceImpl

getOwnPermission() - Method in class org.molgenis.data.security.permission.inheritance.model.InheritedAclPermissionsResult

getOwnPermission() - Method in class org.molgenis.data.security.permission.inheritance.model.InheritedUserPermissionsResult

getParentAclPermission() - Method in class org.molgenis.data.security.permission.inheritance.model.InheritedPermissionsResult

getParentAclPermissions() - Method in class org.molgenis.data.security.permission.inheritance.model.InheritedAclPermissionsResult

getParentRolePermissions() - Method in class org.molgenis.data.security.permission.inheritance.model.InheritedAclPermissionsResult

getPassword() - Method in class org.molgenis.data.security.auth.User

getPermission() - Method in class org.molgenis.data.security.permission.model.LabelledPermission

getPermission() - Method in class org.molgenis.data.security.permission.model.Permission

getPermissions(Set<Sid>, boolean) - Method in interface org.molgenis.data.security.permission.PermissionService

Retrieves all permissions for one or more users

getPermissions(Set<Sid>, boolean) - Method in class org.molgenis.data.security.permission.PermissionServiceDecorator

getPermissions(Set<Sid>, boolean) - Method in class org.molgenis.data.security.permission.PermissionServiceImpl

getPermissionSet(AccessControlEntry) - Static method in class org.molgenis.data.security.permission.PermissionSetUtils

getPermissionsForObject(ObjectIdentity, Set<Sid>, boolean) - Method in interface org.molgenis.data.security.permission.PermissionService

Retrieves the permissions for a object for one or more users

getPermissionsForObject(ObjectIdentity, Set<Sid>, boolean) - Method in class org.molgenis.data.security.permission.PermissionServiceDecorator

getPermissionsForObject(ObjectIdentity, Set<Sid>, boolean) - Method in class org.molgenis.data.security.permission.PermissionServiceImpl

getPermissionsForType(String, Set<Sid>, boolean) - Method in interface org.molgenis.data.security.permission.PermissionService

Retrieves the permissions for all objects of a type for one or more users

getPermissionsForType(String, Set<Sid>, boolean) - Method in class org.molgenis.data.security.permission.PermissionServiceDecorator

getPermissionsForType(String, Set<Sid>, boolean) - Method in class org.molgenis.data.security.permission.PermissionServiceImpl

getPermissionsForType(String, Set<Sid>, int, int) - Method in interface org.molgenis.data.security.permission.PermissionService

Retrieves the permissions for all objects of a type for one or more users

getPermissionsForType(String, Set<Sid>, int, int) - Method in class org.molgenis.data.security.permission.PermissionServiceDecorator

getPermissionsForType(String, Set<Sid>, int, int) - Method in class org.molgenis.data.security.permission.PermissionServiceImpl

getPermissionStringValue(LabelledPermission) - Static method in class org.molgenis.data.security.permission.PermissionSetUtils

getPermissionStringValue(PermissionSet) - Static method in class org.molgenis.data.security.permission.PermissionSetUtils

getPhone() - Method in class org.molgenis.data.security.auth.User

getReachableGrantedAuthorities(Collection<? extends GrantedAuthority>) - Method in class org.molgenis.data.security.auth.CachedRoleHierarchyImpl

getReachableGrantedAuthorities(Collection<? extends GrantedAuthority>) - Method in class org.molgenis.data.security.DataserviceRoleHierarchy

getRequestedAclParentRolesPermissions() - Method in class org.molgenis.data.security.permission.inheritance.model.InheritedPermissionsResult

getRole() - Method in class org.molgenis.data.security.auth.MembershipInvitation

getRole() - Method in class org.molgenis.data.security.auth.RoleMembership

getRole() - Method in class org.molgenis.data.security.auth.User

getRole(String) - Method in class org.molgenis.data.security.auth.RoleService

getRolename(Sid) - Static method in class org.molgenis.data.security.permission.UserRoleTools

getRoles() - Method in class org.molgenis.data.security.auth.Group

getRolesForSid(Sid) - Method in class org.molgenis.data.security.permission.UserRoleTools

getRootPackage() - Method in class org.molgenis.data.security.auth.Group

getSchema() - Method in class org.molgenis.data.security.owned.OwnershipDecoratorFactory

getSid() - Method in class org.molgenis.data.security.permission.inheritance.model.InheritedUserPermissionsResult

getSid() - Method in class org.molgenis.data.security.permission.model.LabelledPermission

getSid() - Method in class org.molgenis.data.security.permission.model.Permission

getSids(List<String>, List<String>) - Method in class org.molgenis.data.security.permission.UserRoleTools

getStatus() - Method in class org.molgenis.data.security.auth.MembershipInvitation

getStatus() - Method in class org.molgenis.data.security.auth.RoleMembership

getSuEmailAddresses() - Method in interface org.molgenis.data.security.user.UserService

Returns e-mail addresses of super users

getSuEmailAddresses() - Method in class org.molgenis.data.security.user.UserServiceImpl

getSuitablePermissionsForType(String) - Method in interface org.molgenis.data.security.permission.PermissionService

Retrieves the permissions that can be granted of objects of a certain type

getSuitablePermissionsForType(String) - Method in class org.molgenis.data.security.permission.PermissionServiceDecorator

getSuitablePermissionsForType(String) - Method in class org.molgenis.data.security.permission.PermissionServiceImpl

getSystemAttribute(String) - Method in class org.molgenis.data.security.SystemEntityTypeRegistryImpl

getSystemEntityType(String) - Method in class org.molgenis.data.security.SystemEntityTypeRegistryImpl

getSystemEntityTypes() - Method in class org.molgenis.data.security.SystemEntityTypeRegistryImpl

getTitle() - Method in class org.molgenis.data.security.auth.User

getTo() - Method in class org.molgenis.data.security.auth.MembershipInvitation

getTo() - Method in class org.molgenis.data.security.auth.RoleMembership

getToken() - Method in class org.molgenis.data.security.auth.MembershipInvitation

getToken() - Method in class org.molgenis.data.security.auth.PasswordResetToken

getToken() - Method in class org.molgenis.data.security.auth.Token

getTollFreePhone() - Method in class org.molgenis.data.security.auth.User

getTypeLabel() - Method in class org.molgenis.data.security.permission.model.LabelledObjectIdentity

getUser() - Method in class org.molgenis.data.security.auth.PasswordResetToken

getUser() - Method in class org.molgenis.data.security.auth.RoleMembership

getUser() - Method in class org.molgenis.data.security.auth.Token

getUser(String) - Method in interface org.molgenis.data.security.user.UserService

Returns the given user

getUser(String) - Method in class org.molgenis.data.security.user.UserServiceImpl

getUserByEmail(String) - Method in interface org.molgenis.data.security.user.UserService

Find a user by it's email.

getUserByEmail(String) - Method in class org.molgenis.data.security.user.UserServiceImpl

getUsername() - Method in class org.molgenis.data.security.auth.User

getUsername(Sid) - Static method in class org.molgenis.data.security.permission.UserRoleTools

getUsers() - Method in interface org.molgenis.data.security.user.UserService

getUsers() - Method in class org.molgenis.data.security.user.UserServiceImpl

getValidity() - Method in class org.molgenis.data.security.auth.RoleMembership

giveUserWriteMetaPermissions(Collection<EntityType>) - Method in interface org.molgenis.data.security.permission.PermissionSystemService

Deprecated.

giveUserWriteMetaPermissions(EntityType) - Method in interface org.molgenis.data.security.permission.PermissionSystemService

Deprecated.

GOOGLEACCOUNTID - Static variable in class org.molgenis.data.security.auth.UserMetadata

grantDefaultPermissions(GroupValue) - Method in class org.molgenis.data.security.auth.GroupPermissionService

Grants default permissions on the root package and group to the roles of the group

Group - Class in org.molgenis.data.security.auth

Group(String, EntityType) - Constructor for class org.molgenis.data.security.auth.Group

Group(Entity) - Constructor for class org.molgenis.data.security.auth.Group

Group(EntityType) - Constructor for class org.molgenis.data.security.auth.Group

GROUP - Static variable in class org.molgenis.data.security.auth.GroupMetadata

GROUP - Static variable in class org.molgenis.data.security.auth.RoleMetadata

GROUP - Static variable in class org.molgenis.data.security.GroupIdentity

GroupFactory - Class in org.molgenis.data.security.auth

GroupIdentity - Class in org.molgenis.data.security

GroupIdentity(String) - Constructor for class org.molgenis.data.security.GroupIdentity

GroupIdentity(Group) - Constructor for class org.molgenis.data.security.GroupIdentity

GroupMetadata - Class in org.molgenis.data.security.auth

GroupMetadata(SecurityPackage, PackageMetadata) - Constructor for class org.molgenis.data.security.auth.GroupMetadata

GroupNameNotAvailableException - Exception in org.molgenis.data.security.exception

GroupNameNotAvailableException(String) - Constructor for exception org.molgenis.data.security.exception.GroupNameNotAvailableException

GroupPackageDowngradeException - Exception in org.molgenis.data.security.exception

Thrown when a Group Package is moved or otherwise updated to be a non-root package.

GroupPackageDowngradeException(Package) - Constructor for exception org.molgenis.data.security.exception.GroupPackageDowngradeException

GroupPackageRepositoryDecorator - Class in org.molgenis.data.security.auth

GroupPackageRepositoryDecorator(Repository<Package>, GroupPackageService) - Constructor for class org.molgenis.data.security.auth.GroupPackageRepositoryDecorator

GroupPackageService - Interface in org.molgenis.data.security.auth

GroupPackageServiceImpl - Class in org.molgenis.data.security

GroupPermission - Enum in org.molgenis.data.security.auth

GroupPermissionDeniedException - Exception in org.molgenis.data.security.exception

GroupPermissionDeniedException(GroupPermission, String) - Constructor for exception org.molgenis.data.security.exception.GroupPermissionDeniedException

GroupPermissionService - Class in org.molgenis.data.security.auth

GroupPermissionService(MutableAclService, PermissionService) - Constructor for class org.molgenis.data.security.auth.GroupPermissionService

GroupService - Class in org.molgenis.data.security.auth

H

hashCode() - Method in class org.molgenis.data.security.aggregation.AnonymizedAggregateResult

hasSystemAttribute(String) - Method in class org.molgenis.data.security.SystemEntityTypeRegistryImpl

hasSystemEntityType(String) - Method in class org.molgenis.data.security.SystemEntityTypeRegistryImpl

I

ID - Static variable in class org.molgenis.data.security.auth.GroupMetadata

ID - Static variable in class org.molgenis.data.security.auth.MembershipInvitationMetadata

ID - Static variable in class org.molgenis.data.security.auth.PasswordResetTokenMetadata

ID - Static variable in class org.molgenis.data.security.auth.RoleMembershipMetadata

ID - Static variable in class org.molgenis.data.security.auth.RoleMetadata

ID - Static variable in class org.molgenis.data.security.auth.TokenMetadata

ID - Static variable in class org.molgenis.data.security.auth.UserMetadata

INCLUDES - Static variable in class org.molgenis.data.security.auth.RoleMetadata

InheritedAclPermissionsResult - Class in org.molgenis.data.security.permission.inheritance.model

InheritedAclPermissionsResult() - Constructor for class org.molgenis.data.security.permission.inheritance.model.InheritedAclPermissionsResult

InheritedPermissionsResult - Class in org.molgenis.data.security.permission.inheritance.model

InheritedPermissionsResult() - Constructor for class org.molgenis.data.security.permission.inheritance.model.InheritedPermissionsResult

InheritedUserPermissionsResult - Class in org.molgenis.data.security.permission.inheritance.model

InheritedUserPermissionsResult() - Constructor for class org.molgenis.data.security.permission.inheritance.model.InheritedUserPermissionsResult

init() - Method in class org.molgenis.data.security.auth.GroupMetadata

init() - Method in class org.molgenis.data.security.auth.MembershipInvitationMetadata

init() - Method in class org.molgenis.data.security.auth.PasswordResetTokenMetadata

init() - Method in class org.molgenis.data.security.auth.RoleMembershipMetadata

init() - Method in class org.molgenis.data.security.auth.RoleMetadata

init() - Method in class org.molgenis.data.security.auth.SecurityPackage

init() - Method in class org.molgenis.data.security.auth.TokenMetadata

init() - Method in class org.molgenis.data.security.auth.UserMetadata

InsufficientInheritancePermissionsException - Exception in org.molgenis.data.security.exception

InsufficientInheritancePermissionsException() - Constructor for exception org.molgenis.data.security.exception.InsufficientInheritancePermissionsException

InsufficientPermissionsException - Exception in org.molgenis.data.security.exception

InsufficientPermissionsException(String, String, List<String>) - Constructor for exception org.molgenis.data.security.exception.InsufficientPermissionsException

InsufficientPermissionsException(ObjectIdentity, List<String>) - Constructor for exception org.molgenis.data.security.exception.InsufficientPermissionsException

InvalidEmailAddressException - Exception in org.molgenis.data.security.user

InvalidEmailAddressException() - Constructor for exception org.molgenis.data.security.user.InvalidEmailAddressException

InvalidTypeIdException - Exception in org.molgenis.data.security.exception

InvalidTypeIdException(String) - Constructor for exception org.molgenis.data.security.exception.InvalidTypeIdException

INVITATION_TEXT - Static variable in class org.molgenis.data.security.auth.MembershipInvitationMetadata

INVITED_BY - Static variable in class org.molgenis.data.security.auth.MembershipInvitationMetadata

isActionPermitted(E, AbstractRowLevelSecurityRepositoryDecorator.Action) - Method in class org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator

isActionPermitted(Object, AbstractRowLevelSecurityRepositoryDecorator.Action) - Method in class org.molgenis.data.security.meta.EntityTypeRepositorySecurityDecorator

isActionPermitted(Object, AbstractRowLevelSecurityRepositoryDecorator.Action) - Method in class org.molgenis.data.security.meta.PackageRepositorySecurityDecorator

isActionPermitted(Object, AbstractRowLevelSecurityRepositoryDecorator.Action) - Method in class org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator

isActionPermitted(Object, AbstractRowLevelSecurityRepositoryDecorator.Action) - Method in class org.molgenis.data.security.owned.RowLevelSecurityRepositoryDecorator

isActionPermitted(Entity, AbstractRowLevelSecurityRepositoryDecorator.Action) - Method in class org.molgenis.data.security.owned.RowLevelSecurityRepositoryDecorator

isActionPermitted(EntityType, AbstractRowLevelSecurityRepositoryDecorator.Action) - Method in class org.molgenis.data.security.meta.EntityTypeRepositorySecurityDecorator

isActionPermitted(Package, AbstractRowLevelSecurityRepositoryDecorator.Action) - Method in class org.molgenis.data.security.meta.PackageRepositorySecurityDecorator

isActive() - Method in class org.molgenis.data.security.auth.User

IsAlreadyMemberException - Exception in org.molgenis.data.security.exception

IsAlreadyMemberException(User, Group) - Constructor for exception org.molgenis.data.security.exception.IsAlreadyMemberException

isChangePassword() - Method in class org.molgenis.data.security.auth.User

isCurrent() - Method in class org.molgenis.data.security.auth.RoleMembership

isExpired() - Method in class org.molgenis.data.security.auth.Token

isGroupNameAvailable(GroupValue) - Method in class org.molgenis.data.security.auth.GroupService

isPublic() - Method in class org.molgenis.data.security.auth.Group

isReadablePackage(Package, UserPermissionEvaluator) - Static method in class org.molgenis.data.security.PackagePermissionUtils

ISSUED - Static variable in class org.molgenis.data.security.auth.MembershipInvitationMetadata

isSuperuser() - Method in class org.molgenis.data.security.auth.User

isTwoFactorAuthentication() - Method in class org.molgenis.data.security.auth.User

isWritablePackage(Package, UserPermissionEvaluator) - Static method in class org.molgenis.data.security.PackagePermissionUtils

iterator() - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

iterator() - Method in class org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator

iterator() - Method in class org.molgenis.data.security.RepositorySecurityDecorator

L

LABEL - Static variable in class org.molgenis.data.security.auth.GroupMetadata

LABEL - Static variable in class org.molgenis.data.security.auth.RoleMetadata

LabelledObject - Class in org.molgenis.data.security.permission.model

LabelledObject() - Constructor for class org.molgenis.data.security.permission.model.LabelledObject

LabelledObjectIdentity - Class in org.molgenis.data.security.permission.model

LabelledObjectIdentity() - Constructor for class org.molgenis.data.security.permission.model.LabelledObjectIdentity

LabelledPermission - Class in org.molgenis.data.security.permission.model

LabelledPermission() - Constructor for class org.molgenis.data.security.permission.model.LabelledPermission

LabelledType - Class in org.molgenis.data.security.permission.model

LabelledType() - Constructor for class org.molgenis.data.security.permission.model.LabelledType

LANGUAGECODE - Static variable in class org.molgenis.data.security.auth.UserMetadata

LAST_UPDATE - Static variable in class org.molgenis.data.security.auth.MembershipInvitationMetadata

LASTNAME - Static variable in class org.molgenis.data.security.auth.UserMetadata

M

MANAGER - Static variable in class org.molgenis.data.security.auth.GroupService

markRoleHierarchyCacheDirty() - Method in interface org.molgenis.data.security.auth.CachedRoleHierarchy

Signals the role hierarchy that its cache is dirty.

markRoleHierarchyCacheDirty() - Method in class org.molgenis.data.security.auth.CachedRoleHierarchyImpl

Marks the role hierarchy cache as dirty for the current transaction/thread.

MEMBERSHIP_INVITATION - Static variable in class org.molgenis.data.security.auth.MembershipInvitationMetadata

MembershipInvitation - Class in org.molgenis.data.security.auth

MembershipInvitation(String, EntityType) - Constructor for class org.molgenis.data.security.auth.MembershipInvitation

MembershipInvitation(Entity) - Constructor for class org.molgenis.data.security.auth.MembershipInvitation

MembershipInvitation(EntityType) - Constructor for class org.molgenis.data.security.auth.MembershipInvitation

MembershipInvitationFactory - Class in org.molgenis.data.security.auth

MembershipInvitationMetadata - Class in org.molgenis.data.security.auth

MembershipInvitationMetadata(SecurityPackage, UserMetadata, RoleMetadata) - Constructor for class org.molgenis.data.security.auth.MembershipInvitationMetadata

MembershipInvitationMetadata.Status - Enum in org.molgenis.data.security.auth

MIDDLENAMES - Static variable in class org.molgenis.data.security.auth.UserMetadata

N

NAME - Static variable in class org.molgenis.data.security.auth.GroupMetadata

NAME - Static variable in class org.molgenis.data.security.auth.RoleMetadata

NAMESPACE - Static variable in class org.molgenis.data.security.config.DataSecurityConfig

NotAValidGroupRoleException - Exception in org.molgenis.data.security.exception

NotAValidGroupRoleException(Role, Group) - Constructor for exception org.molgenis.data.security.exception.NotAValidGroupRoleException

NoWritablePackageException - Exception in org.molgenis.data.security

NoWritablePackageException() - Constructor for exception org.molgenis.data.security.NoWritablePackageException

NullPackageNotSuException - Exception in org.molgenis.data.security.exception

NullPackageNotSuException() - Constructor for exception org.molgenis.data.security.exception.NullPackageNotSuException

NullParentPackageNotSuException - Exception in org.molgenis.data.security.exception

NullParentPackageNotSuException() - Constructor for exception org.molgenis.data.security.exception.NullParentPackageNotSuException

O

org.molgenis.data.security - package org.molgenis.data.security

org.molgenis.data.security.aggregation - package org.molgenis.data.security.aggregation

org.molgenis.data.security.auth - package org.molgenis.data.security.auth

org.molgenis.data.security.config - package org.molgenis.data.security.config

org.molgenis.data.security.exception - package org.molgenis.data.security.exception

org.molgenis.data.security.meta - package org.molgenis.data.security.meta

org.molgenis.data.security.owned - package org.molgenis.data.security.owned

org.molgenis.data.security.permission - package org.molgenis.data.security.permission

org.molgenis.data.security.permission.inheritance - package org.molgenis.data.security.permission.inheritance

org.molgenis.data.security.permission.inheritance.model - package org.molgenis.data.security.permission.inheritance.model

org.molgenis.data.security.permission.model - package org.molgenis.data.security.permission.model

org.molgenis.data.security.user - package org.molgenis.data.security.user

OwnershipDecorator - Class in org.molgenis.data.security.owned

Decorator that assigns ownership based on the owner attribute.

OwnershipDecoratorFactory - Class in org.molgenis.data.security.owned

OwnershipDecoratorFactory(Gson, MutableAclService) - Constructor for class org.molgenis.data.security.owned.OwnershipDecoratorFactory

P

PACKAGE - Static variable in class org.molgenis.data.security.PackageIdentity

PACKAGE_SECURITY - Static variable in class org.molgenis.data.security.auth.SecurityPackage

PackageIdentity - Class in org.molgenis.data.security

PackageIdentity(String) - Constructor for class org.molgenis.data.security.PackageIdentity

PackageIdentity(Package) - Constructor for class org.molgenis.data.security.PackageIdentity

PackagePermission - Enum in org.molgenis.data.security

PackagePermissionDeniedException - Exception in org.molgenis.data.security.exception

PackagePermissionDeniedException(PackagePermission, Package) - Constructor for exception org.molgenis.data.security.exception.PackagePermissionDeniedException

PackagePermissionUtils - Class in org.molgenis.data.security

PackageRepositorySecurityDecorator - Class in org.molgenis.data.security.meta

PackageRepositorySecurityDecorator(Repository<Package>, MutableAclService, UserPermissionEvaluator) - Constructor for class org.molgenis.data.security.meta.PackageRepositorySecurityDecorator

paramValueToPermissionSet(String) - Static method in class org.molgenis.data.security.permission.PermissionSetUtils

ParentPackagePermissionDeniedException - Exception in org.molgenis.data.security.exception

ParentPackagePermissionDeniedException(PackagePermission, Package) - Constructor for exception org.molgenis.data.security.exception.ParentPackagePermissionDeniedException

PASSWORD - Static variable in class org.molgenis.data.security.auth.UserMetadata

PASSWORD_RESET_TOKEN - Static variable in class org.molgenis.data.security.auth.PasswordResetTokenMetadata

PasswordResetToken - Class in org.molgenis.data.security.auth

PasswordResetToken(String, EntityType) - Constructor for class org.molgenis.data.security.auth.PasswordResetToken

PasswordResetToken(Entity) - Constructor for class org.molgenis.data.security.auth.PasswordResetToken

PasswordResetToken(EntityType) - Constructor for class org.molgenis.data.security.auth.PasswordResetToken

PasswordResetTokenFactory - Class in org.molgenis.data.security.auth

PasswordResetTokenMetadata - Class in org.molgenis.data.security.auth

PAST - org.molgenis.data.security.auth.RoleMembership.Status

PENDING - org.molgenis.data.security.auth.MembershipInvitationMetadata.Status

Permission - Class in org.molgenis.data.security.permission.model

Permission() - Constructor for class org.molgenis.data.security.permission.model.Permission

PermissionDeniedException - Exception in org.molgenis.data.security.exception

PermissionDeniedException(String) - Constructor for exception org.molgenis.data.security.exception.PermissionDeniedException

PermissionDeniedException(String, Throwable) - Constructor for exception org.molgenis.data.security.exception.PermissionDeniedException

PermissionInheritanceResolver - Class in org.molgenis.data.security.permission.inheritance

PermissionNotSuitableException - Exception in org.molgenis.data.security.exception

PermissionNotSuitableException(String, String) - Constructor for exception org.molgenis.data.security.exception.PermissionNotSuitableException

PermissionsConfig - Class in org.molgenis.data.security.permission

PermissionService - Interface in org.molgenis.data.security.permission

PermissionServiceDecorator - Class in org.molgenis.data.security.permission

PermissionServiceDecorator(PermissionService, EntityHelper, UserRoleTools, MutableAclService, MutableAclClassService, UserPermissionEvaluator) - Constructor for class org.molgenis.data.security.permission.PermissionServiceDecorator

PermissionServiceImpl - Class in org.molgenis.data.security.permission

PermissionServiceImpl(MutableAclService, PermissionInheritanceResolver, ObjectIdentityService, DataService, MutableAclClassService, UserRoleTools, EntityHelper, UserPermissionEvaluator) - Constructor for class org.molgenis.data.security.permission.PermissionServiceImpl

PermissionSetUtils - Class in org.molgenis.data.security.permission

permissionsService() - Method in class org.molgenis.data.security.permission.PermissionsConfig

PermissionSystemService - Interface in org.molgenis.data.security.permission

Deprecated.

use MutableAclService

persist(GroupValue) - Method in class org.molgenis.data.security.auth.GroupService

Creates Group, Role and Package entities and adds them to the dataService.

PHONE - Static variable in class org.molgenis.data.security.auth.UserMetadata

PLUGIN - Static variable in class org.molgenis.data.security.permission.EntityHelper

PUBLIC - Static variable in class org.molgenis.data.security.auth.GroupMetadata

R

READ - org.molgenis.data.security.EntityPermission

READ - org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator.Action

READ - Static variable in class org.molgenis.data.security.permission.PermissionSetUtils

READ_DATA - org.molgenis.data.security.EntityTypePermission

READ_METADATA - org.molgenis.data.security.EntityTypePermission

READMETA - Static variable in class org.molgenis.data.security.permission.PermissionSetUtils

ReadPermissionDeniedException - Exception in org.molgenis.data.security.exception

ReadPermissionDeniedException(String) - Constructor for exception org.molgenis.data.security.exception.ReadPermissionDeniedException

registerGroupPermissions() - Method in class org.molgenis.data.security.config.DataSecurityConfig

registerPermissions() - Method in class org.molgenis.data.security.permission.DataPermissionConfig

REMOVE_MEMBERSHIP - org.molgenis.data.security.auth.GroupPermission

removeExtendsRole(Group, Role) - Method in class org.molgenis.data.security.auth.GroupService

removeMember(Group, User) - Method in class org.molgenis.data.security.auth.GroupService

removeMembership(RoleMembership) - Method in interface org.molgenis.data.security.permission.RoleMembershipService

removeMembership(RoleMembership) - Method in class org.molgenis.data.security.permission.RoleMembershipServiceImpl

RepositorySecurityDecorator - Class in org.molgenis.data.security

Repository decorated that validates that current user has permission to perform an operation on an entity type's data.

RepositorySecurityDecorator(Repository<Entity>, UserPermissionEvaluator) - Constructor for class org.molgenis.data.security.RepositorySecurityDecorator

REVOKED - org.molgenis.data.security.auth.MembershipInvitationMetadata.Status

Role - Class in org.molgenis.data.security.auth

Role(String, EntityType) - Constructor for class org.molgenis.data.security.auth.Role

Role(Entity) - Constructor for class org.molgenis.data.security.auth.Role

Role(EntityType) - Constructor for class org.molgenis.data.security.auth.Role

ROLE - Static variable in class org.molgenis.data.security.auth.MembershipInvitationMetadata

ROLE - Static variable in class org.molgenis.data.security.auth.RoleMembershipMetadata

ROLE - Static variable in class org.molgenis.data.security.auth.RoleMetadata

ROLE - Static variable in class org.molgenis.data.security.auth.UserMetadata

ROLE_MEMBERSHIP - Static variable in class org.molgenis.data.security.auth.RoleMembershipMetadata

RoleFactory - Class in org.molgenis.data.security.auth

RoleMembership - Class in org.molgenis.data.security.auth

RoleMembership(String, EntityType) - Constructor for class org.molgenis.data.security.auth.RoleMembership

RoleMembership(Entity) - Constructor for class org.molgenis.data.security.auth.RoleMembership

RoleMembership(EntityType) - Constructor for class org.molgenis.data.security.auth.RoleMembership

RoleMembership.Status - Enum in org.molgenis.data.security.auth

RoleMembershipDecorator - Class in org.molgenis.data.security.auth

RoleMembershipFactory - Class in org.molgenis.data.security.auth

RoleMembershipMetadata - Class in org.molgenis.data.security.auth

RoleMembershipMetadata(SecurityPackage, UserMetadata, RoleMetadata) - Constructor for class org.molgenis.data.security.auth.RoleMembershipMetadata

RoleMembershipRepositoryDecoratorFactory - Class in org.molgenis.data.security.auth

RoleMembershipRepositoryDecoratorFactory(RoleMembershipMetadata, RoleMembershipValidator) - Constructor for class org.molgenis.data.security.auth.RoleMembershipRepositoryDecoratorFactory

RoleMembershipService - Interface in org.molgenis.data.security.permission

RoleMembershipServiceImpl - Class in org.molgenis.data.security.permission

RoleMembershipValidationException - Exception in org.molgenis.data.security.auth

RoleMembershipValidationException(RoleMembership) - Constructor for exception org.molgenis.data.security.auth.RoleMembershipValidationException

RoleMembershipValidator - Interface in org.molgenis.data.security.auth

RoleMembershipValidatorImpl - Class in org.molgenis.data.security.auth

RoleMetadata - Class in org.molgenis.data.security.auth

RoleRepositoryDecorator - Class in org.molgenis.data.security.auth

RoleRepositoryDecoratorFactory - Class in org.molgenis.data.security.auth

RoleRepositoryDecoratorFactory(RoleMetadata, CachedRoleHierarchy) - Constructor for class org.molgenis.data.security.auth.RoleRepositoryDecoratorFactory

ROLES - Static variable in class org.molgenis.data.security.auth.GroupMetadata

RoleService - Class in org.molgenis.data.security.auth

RoleService(DataService, RoleMetadata) - Constructor for class org.molgenis.data.security.auth.RoleService

rollbackTransaction(String) - Method in class org.molgenis.data.security.auth.CachedRoleHierarchyImpl

ROOT_PACKAGE - Static variable in class org.molgenis.data.security.auth.GroupMetadata

RowLevelSecurityRepositoryDecorator - Class in org.molgenis.data.security.owned

RepositoryDecorator that works on EntityTypes that are row-level secured.

RowLevelSecurityRepositoryDecoratorFactory - Class in org.molgenis.data.security.owned

S

SecurityPackage - Class in org.molgenis.data.security.auth

SecurityPackage(PackageMetadata, RootSystemPackage) - Constructor for class org.molgenis.data.security.auth.SecurityPackage

setActivationCode(String) - Method in class org.molgenis.data.security.auth.User

setActive(boolean) - Method in class org.molgenis.data.security.auth.User

setAddress(String) - Method in class org.molgenis.data.security.auth.User

setAffiliation(String) - Method in class org.molgenis.data.security.auth.User

setChangePassword(Boolean) - Method in class org.molgenis.data.security.auth.User

setCity(String) - Method in class org.molgenis.data.security.auth.User

setCountry(String) - Method in class org.molgenis.data.security.auth.User

setCreationDate(Instant) - Method in class org.molgenis.data.security.auth.Token

setDeclineReason(String) - Method in class org.molgenis.data.security.auth.MembershipInvitation

setDepartment(String) - Method in class org.molgenis.data.security.auth.User

setDescription(String) - Method in class org.molgenis.data.security.auth.Group

setDescription(String) - Method in class org.molgenis.data.security.auth.Role

setDescription(String) - Method in class org.molgenis.data.security.auth.Token

setDescription(String, String) - Method in class org.molgenis.data.security.auth.Group

setDescription(String, String) - Method in class org.molgenis.data.security.auth.Role

setEmail(String) - Method in class org.molgenis.data.security.auth.MembershipInvitation

setEmail(String) - Method in class org.molgenis.data.security.auth.User

setExpirationDate(Instant) - Method in class org.molgenis.data.security.auth.PasswordResetToken

setExpirationDate(Instant) - Method in class org.molgenis.data.security.auth.Token

setFax(String) - Method in class org.molgenis.data.security.auth.User

setFirstName(String) - Method in class org.molgenis.data.security.auth.User

setFrom(Instant) - Method in class org.molgenis.data.security.auth.MembershipInvitation

setFrom(Instant) - Method in class org.molgenis.data.security.auth.RoleMembership

setGoogleAccountId(String) - Method in class org.molgenis.data.security.auth.User

setGroup(Group) - Method in class org.molgenis.data.security.auth.Role

setId(String) - Method in class org.molgenis.data.security.auth.Group

setId(String) - Method in class org.molgenis.data.security.auth.MembershipInvitation

setId(String) - Method in class org.molgenis.data.security.auth.PasswordResetToken

setId(String) - Method in class org.molgenis.data.security.auth.Role

setId(String) - Method in class org.molgenis.data.security.auth.RoleMembership

setId(String) - Method in class org.molgenis.data.security.auth.Token

setId(String) - Method in class org.molgenis.data.security.auth.User

setIncludes(Iterable<Role>) - Method in class org.molgenis.data.security.auth.Role

setInvitationText(String) - Method in class org.molgenis.data.security.auth.MembershipInvitation

setInvitedBy(User) - Method in class org.molgenis.data.security.auth.MembershipInvitation

setLabel(String) - Method in class org.molgenis.data.security.auth.Group

setLabel(String) - Method in class org.molgenis.data.security.auth.Role

setLabel(String, String) - Method in class org.molgenis.data.security.auth.Group

setLabel(String, String) - Method in class org.molgenis.data.security.auth.Role

setLanguageCode(String) - Method in class org.molgenis.data.security.auth.User

setLastName(String) - Method in class org.molgenis.data.security.auth.User

setLastUpdateNow() - Method in class org.molgenis.data.security.auth.MembershipInvitation

setMiddleNames(String) - Method in class org.molgenis.data.security.auth.User

setName(String) - Method in class org.molgenis.data.security.auth.Group

setName(String) - Method in class org.molgenis.data.security.auth.Role

setPassword(String) - Method in class org.molgenis.data.security.auth.User

setPhone(String) - Method in class org.molgenis.data.security.auth.User

setPublic(boolean) - Method in class org.molgenis.data.security.auth.Group

setRole(String) - Method in class org.molgenis.data.security.auth.User

setRole(Role) - Method in class org.molgenis.data.security.auth.MembershipInvitation

setRole(Role) - Method in class org.molgenis.data.security.auth.RoleMembership

setRoleMetadata(RoleMetadata) - Method in class org.molgenis.data.security.auth.GroupMetadata

setRoles(Iterable<Role>) - Method in class org.molgenis.data.security.auth.Group

setRootPackage(Package) - Method in class org.molgenis.data.security.auth.Group

setStatus(MembershipInvitationMetadata.Status) - Method in class org.molgenis.data.security.auth.MembershipInvitation

setSuperuser(boolean) - Method in class org.molgenis.data.security.auth.User

setTitle(String) - Method in class org.molgenis.data.security.auth.User

setTo(Instant) - Method in class org.molgenis.data.security.auth.MembershipInvitation

setTo(Instant) - Method in class org.molgenis.data.security.auth.RoleMembership

setToken(String) - Method in class org.molgenis.data.security.auth.MembershipInvitation

setToken(String) - Method in class org.molgenis.data.security.auth.PasswordResetToken

setToken(String) - Method in class org.molgenis.data.security.auth.Token

setTollFreePhone(String) - Method in class org.molgenis.data.security.auth.User

setTwoFactorAuthentication(boolean) - Method in class org.molgenis.data.security.auth.User

setUser(User) - Method in class org.molgenis.data.security.auth.PasswordResetToken

setUser(User) - Method in class org.molgenis.data.security.auth.RoleMembership

setUser(User) - Method in class org.molgenis.data.security.auth.Token

setUsername(String) - Method in class org.molgenis.data.security.auth.User

SidPermissionException - Exception in org.molgenis.data.security.exception

SidPermissionException(String) - Constructor for exception org.molgenis.data.security.exception.SidPermissionException

SIMPLE_NAME - Static variable in class org.molgenis.data.security.auth.SecurityPackage

STATUS - Static variable in class org.molgenis.data.security.auth.MembershipInvitationMetadata

SUPERUSER - Static variable in class org.molgenis.data.security.auth.UserMetadata

SUPERUSER - Static variable in class org.molgenis.data.security.permission.PermissionServiceDecorator

SuperUserPermissionsException - Exception in org.molgenis.data.security.exception

SuperUserPermissionsException(String) - Constructor for exception org.molgenis.data.security.exception.SuperUserPermissionsException

SYS_PLUGIN - Static variable in class org.molgenis.data.security.permission.EntityHelper

SystemEntityTypeRegistryImpl - Class in org.molgenis.data.security

SystemMetadataModificationException - Exception in org.molgenis.data.security.exception

Thrown when users try to modify system metadata.

SystemMetadataModificationException() - Constructor for exception org.molgenis.data.security.exception.SystemMetadataModificationException

SystemRlsModificationException - Exception in org.molgenis.data.security.exception

SystemRlsModificationException(String) - Constructor for exception org.molgenis.data.security.exception.SystemRlsModificationException

T

throwPermissionException(E, AbstractRowLevelSecurityRepositoryDecorator.Action) - Method in class org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator

throwPermissionException(Entity, AbstractRowLevelSecurityRepositoryDecorator.Action) - Method in class org.molgenis.data.security.owned.RowLevelSecurityRepositoryDecorator

throwPermissionException(EntityType, AbstractRowLevelSecurityRepositoryDecorator.Action) - Method in class org.molgenis.data.security.meta.EntityTypeRepositorySecurityDecorator

throwPermissionException(Package, AbstractRowLevelSecurityRepositoryDecorator.Action) - Method in class org.molgenis.data.security.meta.PackageRepositorySecurityDecorator

TITLE - Static variable in class org.molgenis.data.security.auth.UserMetadata

TO - Static variable in class org.molgenis.data.security.auth.MembershipInvitationMetadata

TO - Static variable in class org.molgenis.data.security.auth.RoleMembershipMetadata

toIdType(EntityType) - Static method in class org.molgenis.data.security.EntityIdentityUtils

Returns the domain object identifier type (e.g.

Token - Class in org.molgenis.data.security.auth

Token(String, EntityType) - Constructor for class org.molgenis.data.security.auth.Token

Token(Entity) - Constructor for class org.molgenis.data.security.auth.Token

Token(EntityType) - Constructor for class org.molgenis.data.security.auth.Token

TOKEN - Static variable in class org.molgenis.data.security.auth.MembershipInvitationMetadata

TOKEN - Static variable in class org.molgenis.data.security.auth.PasswordResetTokenMetadata

TOKEN - Static variable in class org.molgenis.data.security.auth.TokenMetadata

TOKEN_ATTR - Static variable in class org.molgenis.data.security.auth.TokenMetadata

TokenFactory - Class in org.molgenis.data.security.auth

TokenMetadata - Class in org.molgenis.data.security.auth

TOLLFREEPHONE - Static variable in class org.molgenis.data.security.auth.UserMetadata

toType(String) - Static method in class org.molgenis.data.security.EntityIdentityUtils

Returns the domain object type for the given entity type identifier.

toType(EntityType) - Static method in class org.molgenis.data.security.EntityIdentityUtils

Returns the domain object type for the given entity type.

transactionStarted(String) - Method in class org.molgenis.data.security.auth.CachedRoleHierarchyImpl

TWO_FACTOR_AUTHENTICATION - Static variable in class org.molgenis.data.security.auth.UserMetadata

TYPE_PREFIX - Static variable in class org.molgenis.data.security.EntityIdentityUtils

U

UNEXPECTED_MASK_MESSAGE - Static variable in class org.molgenis.data.security.permission.PermissionSetUtils

UnknownAceException - Exception in org.molgenis.data.security.exception

UnknownAceException(ObjectIdentity, Sid, String) - Constructor for exception org.molgenis.data.security.exception.UnknownAceException

UnknownRoleException - Exception in org.molgenis.data.security.exception

UnknownRoleException(String) - Constructor for exception org.molgenis.data.security.exception.UnknownRoleException

UnknownTypeException - Exception in org.molgenis.data.security.exception

UnknownTypeException(String) - Constructor for exception org.molgenis.data.security.exception.UnknownTypeException

UnknownUserException - Exception in org.molgenis.data.security.user

UnknownUserException(String) - Constructor for exception org.molgenis.data.security.user.UnknownUserException

update(E) - Method in class org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator

update(Stream<E>) - Method in class org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator

update(Stream<Entity>) - Method in class org.molgenis.data.security.RepositorySecurityDecorator

update(Stream<Attribute>) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

update(Stream<Package>) - Method in class org.molgenis.data.security.auth.GroupPackageRepositoryDecorator

update(Stream<Role>) - Method in class org.molgenis.data.security.auth.RoleRepositoryDecorator

update(Stream<RoleMembership>) - Method in class org.molgenis.data.security.auth.RoleMembershipDecorator

update(Stream<User>) - Method in class org.molgenis.data.security.auth.UserRepositoryDecorator

update(Entity) - Method in class org.molgenis.data.security.RepositorySecurityDecorator

update(Attribute) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

update(Package) - Method in class org.molgenis.data.security.auth.GroupPackageRepositoryDecorator

update(Package) - Method in class org.molgenis.data.security.meta.PackageRepositorySecurityDecorator

update(Role) - Method in class org.molgenis.data.security.auth.RoleRepositoryDecorator

update(RoleMembership) - Method in class org.molgenis.data.security.auth.RoleMembershipDecorator

update(User) - Method in class org.molgenis.data.security.auth.UserRepositoryDecorator

update(User) - Method in interface org.molgenis.data.security.user.UserService

Update user

update(User) - Method in class org.molgenis.data.security.user.UserServiceImpl

UPDATE - org.molgenis.data.security.EntityPermission

UPDATE - org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator.Action

UPDATE - org.molgenis.data.security.PackagePermission

UPDATE_DATA - org.molgenis.data.security.EntityTypePermission

UPDATE_MEMBERSHIP - org.molgenis.data.security.auth.GroupPermission

UPDATE_METADATA - org.molgenis.data.security.EntityTypePermission

updateAcl(E) - Method in class org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator

updateAcl(Entity) - Method in class org.molgenis.data.security.owned.RowLevelSecurityRepositoryDecorator

updateAcl(EntityType) - Method in class org.molgenis.data.security.meta.EntityTypeRepositorySecurityDecorator

updateAcl(Package) - Method in class org.molgenis.data.security.meta.PackageRepositorySecurityDecorator

updateExtendsRole(Group, Role, Role) - Method in class org.molgenis.data.security.auth.GroupService

updateMemberRole(Group, User, Role) - Method in class org.molgenis.data.security.auth.GroupService

updateMembership(RoleMembership, Role) - Method in interface org.molgenis.data.security.permission.RoleMembershipService

updateMembership(RoleMembership, Role) - Method in class org.molgenis.data.security.permission.RoleMembershipServiceImpl

updatePermission(Permission) - Method in interface org.molgenis.data.security.permission.PermissionService

Updates a existing permission for a user on an object identity

updatePermission(Permission) - Method in class org.molgenis.data.security.permission.PermissionServiceDecorator

updatePermission(Permission) - Method in class org.molgenis.data.security.permission.PermissionServiceImpl

updatePermissions(Set<Permission>) - Method in interface org.molgenis.data.security.permission.PermissionService

Updates existing permissions for a user on an object identity

updatePermissions(Set<Permission>) - Method in class org.molgenis.data.security.permission.PermissionServiceDecorator

updatePermissions(Set<Permission>) - Method in class org.molgenis.data.security.permission.PermissionServiceImpl

User - Class in org.molgenis.data.security.auth

User(String, EntityType) - Constructor for class org.molgenis.data.security.auth.User

User(Entity) - Constructor for class org.molgenis.data.security.auth.User

User(EntityType) - Constructor for class org.molgenis.data.security.auth.User

USER - Static variable in class org.molgenis.data.security.auth.PasswordResetTokenMetadata

USER - Static variable in class org.molgenis.data.security.auth.RoleMembershipMetadata

USER - Static variable in class org.molgenis.data.security.auth.TokenMetadata

USER - Static variable in class org.molgenis.data.security.auth.UserMetadata

UserFactory - Class in org.molgenis.data.security.auth

UserMetadata - Class in org.molgenis.data.security.auth

UserMetadata(SecurityPackage) - Constructor for class org.molgenis.data.security.auth.UserMetadata

USERNAME - Static variable in class org.molgenis.data.security.auth.UserMetadata

UserRepositoryDecorator - Class in org.molgenis.data.security.auth

UserRepositoryDecoratorFactory - Class in org.molgenis.data.security.auth

UserRepositoryDecoratorFactory(UserMetadata, PasswordEncoder, UserValidator) - Constructor for class org.molgenis.data.security.auth.UserRepositoryDecoratorFactory

UserRoleTools - Class in org.molgenis.data.security.permission

UserService - Interface in org.molgenis.data.security.user

UserServiceImpl - Class in org.molgenis.data.security.user

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validate(RoleMembership) - Method in interface org.molgenis.data.security.auth.RoleMembershipValidator

validate(RoleMembership) - Method in class org.molgenis.data.security.auth.RoleMembershipValidatorImpl

valueOf(String) - Static method in enum org.molgenis.data.security.auth.GroupPermission

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.molgenis.data.security.auth.MembershipInvitationMetadata.Status

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.molgenis.data.security.auth.RoleMembership.Status

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.molgenis.data.security.EntityPermission

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.molgenis.data.security.EntityTypePermission

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator.Action

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.molgenis.data.security.PackagePermission

Returns the enum constant of this type with the specified name.

values() - Static method in enum org.molgenis.data.security.auth.GroupPermission

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.molgenis.data.security.auth.MembershipInvitationMetadata.Status

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.molgenis.data.security.auth.RoleMembership.Status

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.molgenis.data.security.EntityPermission

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.molgenis.data.security.EntityTypePermission

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.molgenis.data.security.owned.AbstractRowLevelSecurityRepositoryDecorator.Action

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.molgenis.data.security.PackagePermission

Returns an array containing the constants of this enum type, in the order they are declared.

VIEW - org.molgenis.data.security.auth.GroupPermission

VIEW - org.molgenis.data.security.PackagePermission

VIEW_MEMBERSHIP - org.molgenis.data.security.auth.GroupPermission

VIEWER - Static variable in class org.molgenis.data.security.auth.GroupService

W

WRITE - Static variable in class org.molgenis.data.security.permission.PermissionSetUtils

WRITEMETA - Static variable in class org.molgenis.data.security.permission.PermissionSetUtils

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