A C D E F G H I L M N O P Q R S T U V

A

ACTIVATIONCODE - Static variable in class org.molgenis.auth.UserMetaData

ACTIVE - Static variable in class org.molgenis.auth.GroupMetaData

ACTIVE - Static variable in class org.molgenis.auth.UserMetaData

add(User) - Method in class org.molgenis.auth.UserRepositoryDecorator

add(Stream<User>) - Method in class org.molgenis.auth.UserRepositoryDecorator

add(Entity) - Method in class org.molgenis.data.RepositorySecurityDecorator

add(Stream<Entity>) - Method in class org.molgenis.data.RepositorySecurityDecorator

add(Attribute) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

add(Stream<Attribute>) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

add(EntityType) - Method in class org.molgenis.data.security.meta.EntityTypeRepositorySecurityDecorator

add(Stream<EntityType>) - Method in class org.molgenis.data.security.meta.EntityTypeRepositorySecurityDecorator

add(Entity) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator

add(Stream<Entity>) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator

ADDRESS - Static variable in class org.molgenis.auth.UserMetaData

addSystemEntityType(SystemEntityType) - Method in class org.molgenis.data.security.SystemEntityTypeRegistryImpl

AFFILIATION - Static variable in class org.molgenis.auth.UserMetaData

aggregate(AggregateQuery) - Method in class org.molgenis.data.aggregation.AggregateAnonymizerRepositoryDecorator

aggregate(AggregateQuery) - Method in class org.molgenis.data.RepositorySecurityDecorator

aggregate(AggregateQuery) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

aggregate(AggregateQuery) - Method in class org.molgenis.data.security.meta.EntityTypeRepositorySecurityDecorator

aggregate(AggregateQuery) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator

AGGREGATE_ANONYMIZATION_VALUE - Static variable in interface org.molgenis.data.aggregation.AggregateAnonymizer

AggregateAnonymizer - Interface in org.molgenis.data.aggregation

Filter counts smaller the a threshold value

AggregateAnonymizerImpl - Class in org.molgenis.data.aggregation

AggregateAnonymizerImpl() - Constructor for class org.molgenis.data.aggregation.AggregateAnonymizerImpl

AggregateAnonymizerRepositoryDecorator<E extends Entity> - Class in org.molgenis.data.aggregation

Repository decorator that anonymizes aggregate query results based on application anonymization settings.

AggregateAnonymizerRepositoryDecorator(Repository<E>, AggregateAnonymizer, AppSettings) - Constructor for class org.molgenis.data.aggregation.AggregateAnonymizerRepositoryDecorator

anonymize(AggregateResult, int) - Method in interface org.molgenis.data.aggregation.AggregateAnonymizer

anonymize(AggregateResult, int) - Method in class org.molgenis.data.aggregation.AggregateAnonymizerImpl

AnonymizedAggregateResult - Class in org.molgenis.data.aggregation

AnonymizedAggregateResult(List<List<Long>>, List<Object>, List<Object>, int) - Constructor for class org.molgenis.data.aggregation.AnonymizedAggregateResult

AttributeRepositorySecurityDecorator - Class in org.molgenis.data.security.meta

Decorator for the attribute repository: - filters requested entities based on the entity permissions of the current user.

AttributeRepositorySecurityDecorator(Repository<Attribute>, SystemEntityTypeRegistry, PermissionService) - Constructor for class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

Authority - Class in org.molgenis.auth

Authority(Entity) - Constructor for class org.molgenis.auth.Authority

Authority(EntityType) - Constructor for class org.molgenis.auth.Authority

AUTHORITY - Static variable in class org.molgenis.auth.AuthorityMetaData

AuthorityMetaData - Class in org.molgenis.auth

C

CHANGE_PASSWORD - Static variable in class org.molgenis.auth.UserMetaData

CITY - Static variable in class org.molgenis.auth.UserMetaData

close() - Method in class org.molgenis.data.RepositorySecurityDecorator

count(Query<Entity>) - Method in class org.molgenis.data.RepositorySecurityDecorator

count() - Method in class org.molgenis.data.RepositorySecurityDecorator

count() - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

count(Query<Attribute>) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

count() - Method in class org.molgenis.data.security.meta.EntityTypeRepositorySecurityDecorator

count(Query<EntityType>) - Method in class org.molgenis.data.security.meta.EntityTypeRepositorySecurityDecorator

count() - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator

count(Query<Entity>) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator

COUNTRY - Static variable in class org.molgenis.auth.UserMetaData

createDecoratedRepository(Repository<User>) - Method in class org.molgenis.auth.UserRepositoryDecoratorFactory

CREATIONDATE - Static variable in class org.molgenis.auth.TokenMetaData

D

delete(User) - Method in class org.molgenis.auth.UserRepositoryDecorator

delete(Stream<User>) - Method in class org.molgenis.auth.UserRepositoryDecorator

delete(Entity) - Method in class org.molgenis.data.RepositorySecurityDecorator

delete(Stream<Entity>) - Method in class org.molgenis.data.RepositorySecurityDecorator

delete(Attribute) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

delete(Stream<Attribute>) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

delete(EntityType) - Method in class org.molgenis.data.security.meta.EntityTypeRepositorySecurityDecorator

delete(Stream<EntityType>) - Method in class org.molgenis.data.security.meta.EntityTypeRepositorySecurityDecorator

delete(Entity) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator

delete(Stream<Entity>) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator

deleteAll(Stream<Object>) - Method in class org.molgenis.auth.UserRepositoryDecorator

deleteAll() - Method in class org.molgenis.auth.UserRepositoryDecorator

deleteAll(Stream<Object>) - Method in class org.molgenis.data.RepositorySecurityDecorator

deleteAll() - Method in class org.molgenis.data.RepositorySecurityDecorator

deleteAll(Stream<Object>) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

deleteAll() - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

deleteAll(Stream<Object>) - Method in class org.molgenis.data.security.meta.EntityTypeRepositorySecurityDecorator

deleteAll() - Method in class org.molgenis.data.security.meta.EntityTypeRepositorySecurityDecorator

deleteAll(Stream<Object>) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator

deleteAll() - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator

deleteById(Object) - Method in class org.molgenis.auth.UserRepositoryDecorator

deleteById(Object) - Method in class org.molgenis.data.RepositorySecurityDecorator

deleteById(Object) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

deleteById(Object) - Method in class org.molgenis.data.security.meta.EntityTypeRepositorySecurityDecorator

deleteById(Object) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator

DEPARTMENT - Static variable in class org.molgenis.auth.UserMetaData

DESCRIPTION - Static variable in class org.molgenis.auth.TokenMetaData

E

EMAIL - Static variable in class org.molgenis.auth.UserMetaData

EntityTypeRepositorySecurityDecorator - Class in org.molgenis.data.security.meta

Decorator for the entity type repository: - filters requested entities based on the permissions of the current user - validates permissions when adding, updating or deleting entity types

EntityTypeRepositorySecurityDecorator(Repository<EntityType>, SystemEntityTypeRegistry, PermissionService, DataService) - Constructor for class org.molgenis.data.security.meta.EntityTypeRepositorySecurityDecorator

equals(Object) - Method in class org.molgenis.data.aggregation.AnonymizedAggregateResult

EXPIRATIONDATE - Static variable in class org.molgenis.auth.TokenMetaData

F

FAX - Static variable in class org.molgenis.auth.UserMetaData

findAll(Query<Entity>) - Method in class org.molgenis.data.RepositorySecurityDecorator

findAll(Stream<Object>) - Method in class org.molgenis.data.RepositorySecurityDecorator

findAll(Stream<Object>, Fetch) - Method in class org.molgenis.data.RepositorySecurityDecorator

findAll(Query<Attribute>) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

findAll(Stream<Object>) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

findAll(Stream<Object>, Fetch) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

findAll(Query<EntityType>) - Method in class org.molgenis.data.security.meta.EntityTypeRepositorySecurityDecorator

findAll(Stream<Object>) - Method in class org.molgenis.data.security.meta.EntityTypeRepositorySecurityDecorator

findAll(Stream<Object>, Fetch) - Method in class org.molgenis.data.security.meta.EntityTypeRepositorySecurityDecorator

findAll(Query<Entity>) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator

findAll(Stream<Object>) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator

findAll(Stream<Object>, Fetch) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator

findOne(Query<Entity>) - Method in class org.molgenis.data.RepositorySecurityDecorator

findOne(Query<Attribute>) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

findOne(Query<EntityType>) - Method in class org.molgenis.data.security.meta.EntityTypeRepositorySecurityDecorator

findOne(Query<Entity>) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator

findOneById(Object) - Method in class org.molgenis.data.RepositorySecurityDecorator

findOneById(Object, Fetch) - Method in class org.molgenis.data.RepositorySecurityDecorator

findOneById(Object) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

findOneById(Object, Fetch) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

findOneById(Object) - Method in class org.molgenis.data.security.meta.EntityTypeRepositorySecurityDecorator

findOneById(Object, Fetch) - Method in class org.molgenis.data.security.meta.EntityTypeRepositorySecurityDecorator

findOneById(Object) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator

findOneById(Object, Fetch) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator

FIRSTNAME - Static variable in class org.molgenis.auth.UserMetaData

forEachBatched(Fetch, Consumer<List<Entity>>, int) - Method in class org.molgenis.data.RepositorySecurityDecorator

forEachBatched(Fetch, Consumer<List<Attribute>>, int) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

forEachBatched(Fetch, Consumer<List<EntityType>>, int) - Method in class org.molgenis.data.security.meta.EntityTypeRepositorySecurityDecorator

forEachBatched(Fetch, Consumer<List<Entity>>, int) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator

G

getActivationCode() - Method in class org.molgenis.auth.User

getAddress() - Method in class org.molgenis.auth.User

getAffiliation() - Method in class org.molgenis.auth.User

getAnonymizationThreshold() - Method in class org.molgenis.data.aggregation.AnonymizedAggregateResult

getCity() - Method in class org.molgenis.auth.User

getCountry() - Method in class org.molgenis.auth.User

getCreationDate() - Method in class org.molgenis.auth.Token

getDepartment() - Method in class org.molgenis.auth.User

getDependencies() - Method in class org.molgenis.auth.GroupAuthorityMetaData

getDependencies() - Method in class org.molgenis.auth.GroupMetaData

getDependencies() - Method in class org.molgenis.auth.UserAuthorityMetaData

getDescription() - Method in class org.molgenis.auth.Token

getEmail() - Method in class org.molgenis.auth.User

getExpirationDate() - Method in class org.molgenis.auth.Token

getFax() - Method in class org.molgenis.auth.User

getFirstName() - Method in class org.molgenis.auth.User

getGoogleAccountId() - Method in class org.molgenis.auth.User

getGroup() - Method in class org.molgenis.auth.GroupAuthority

getGroup() - Method in class org.molgenis.auth.GroupMember

getId() - Method in class org.molgenis.auth.Group

getId() - Method in class org.molgenis.auth.GroupAuthority

getId() - Method in class org.molgenis.auth.GroupMember

getId() - Method in class org.molgenis.auth.Token

getId() - Method in class org.molgenis.auth.User

getId() - Method in class org.molgenis.auth.UserAuthority

getLanguageCode() - Method in class org.molgenis.auth.User

getLastName() - Method in class org.molgenis.auth.User

getMiddleNames() - Method in class org.molgenis.auth.User

getName() - Method in class org.molgenis.auth.Group

getOwnerUsername() - Method in class org.molgenis.security.owned.OwnedEntity

getPassword() - Method in class org.molgenis.auth.User

getPhone() - Method in class org.molgenis.auth.User

getRole() - Method in class org.molgenis.auth.Authority

getRole() - Method in class org.molgenis.auth.User

getSuEmailAddresses() - Method in interface org.molgenis.security.user.UserService

Returns e-mail addresses of super users

getSuEmailAddresses() - Method in class org.molgenis.security.user.UserServiceImpl

getSystemAttribute(String) - Method in class org.molgenis.data.security.SystemEntityTypeRegistryImpl

getSystemEntityType(String) - Method in class org.molgenis.data.security.SystemEntityTypeRegistryImpl

getSystemEntityTypes() - Method in class org.molgenis.data.security.SystemEntityTypeRegistryImpl

getTitle() - Method in class org.molgenis.auth.User

getToken() - Method in class org.molgenis.auth.Token

getTollFreePhone() - Method in class org.molgenis.auth.User

getUser() - Method in class org.molgenis.auth.GroupMember

getUser() - Method in class org.molgenis.auth.Token

getUser() - Method in class org.molgenis.auth.UserAuthority

getUser(String) - Method in interface org.molgenis.security.user.UserService

Returns the given user

getUser(String) - Method in class org.molgenis.security.user.UserServiceImpl

getUserByEmail(String) - Method in interface org.molgenis.security.user.UserService

Find a user by it's email.

getUserByEmail(String) - Method in class org.molgenis.security.user.UserServiceImpl

getUserGroups(String) - Method in interface org.molgenis.security.user.UserService

Returns the groups that the given user belongs to

getUserGroups(String) - Method in class org.molgenis.security.user.UserServiceImpl

getUsername() - Method in class org.molgenis.auth.User

giveUserWriteMetaPermissions(EntityType) - Method in interface org.molgenis.security.permission.PermissionSystemService

giveUserWriteMetaPermissions(Collection<EntityType>) - Method in interface org.molgenis.security.permission.PermissionSystemService

GOOGLEACCOUNTID - Static variable in class org.molgenis.auth.UserMetaData

Group - Class in org.molgenis.auth

Group(Entity) - Constructor for class org.molgenis.auth.Group

Group(EntityType) - Constructor for class org.molgenis.auth.Group

Group(String, EntityType) - Constructor for class org.molgenis.auth.Group

GROUP - Static variable in class org.molgenis.auth.GroupAuthorityMetaData

GROUP - Static variable in class org.molgenis.auth.GroupMemberMetaData

GROUP - Static variable in class org.molgenis.auth.GroupMetaData

GROUP_AUTHORITY - Static variable in class org.molgenis.auth.GroupAuthorityMetaData

GROUP_MEMBER - Static variable in class org.molgenis.auth.GroupMemberMetaData

GroupAuthority - Class in org.molgenis.auth

GroupAuthority(Entity) - Constructor for class org.molgenis.auth.GroupAuthority

GroupAuthority(EntityType) - Constructor for class org.molgenis.auth.GroupAuthority

GroupAuthority(String, EntityType) - Constructor for class org.molgenis.auth.GroupAuthority

GroupAuthorityFactory - Class in org.molgenis.auth

GroupAuthorityMetaData - Class in org.molgenis.auth

GroupFactory - Class in org.molgenis.auth

GroupMember - Class in org.molgenis.auth

GroupMember(Entity) - Constructor for class org.molgenis.auth.GroupMember

GroupMember(EntityType) - Constructor for class org.molgenis.auth.GroupMember

GroupMember(String, EntityType) - Constructor for class org.molgenis.auth.GroupMember

GroupMemberFactory - Class in org.molgenis.auth

GroupMemberMetaData - Class in org.molgenis.auth

GroupMetaData - Class in org.molgenis.auth

H

hashCode() - Method in class org.molgenis.data.aggregation.AnonymizedAggregateResult

hasSystemAttribute(String) - Method in class org.molgenis.data.security.SystemEntityTypeRegistryImpl

hasSystemEntityType(String) - Method in class org.molgenis.data.security.SystemEntityTypeRegistryImpl

I

ID - Static variable in class org.molgenis.auth.GroupAuthorityMetaData

ID - Static variable in class org.molgenis.auth.GroupMemberMetaData

ID - Static variable in class org.molgenis.auth.GroupMetaData

ID - Static variable in class org.molgenis.auth.TokenMetaData

ID - Static variable in class org.molgenis.auth.UserAuthorityMetaData

ID - Static variable in class org.molgenis.auth.UserMetaData

init() - Method in class org.molgenis.auth.AuthorityMetaData

init() - Method in class org.molgenis.auth.GroupAuthorityMetaData

init() - Method in class org.molgenis.auth.GroupMemberMetaData

init() - Method in class org.molgenis.auth.GroupMetaData

init() - Method in class org.molgenis.auth.SecurityPackage

init() - Method in class org.molgenis.auth.TokenMetaData

init() - Method in class org.molgenis.auth.UserAuthorityMetaData

init() - Method in class org.molgenis.auth.UserMetaData

init() - Method in class org.molgenis.security.owned.OwnedEntityType

isActive() - Method in class org.molgenis.auth.Group

isActive() - Method in class org.molgenis.auth.User

isChangePassword() - Method in class org.molgenis.auth.User

isExpired() - Method in class org.molgenis.auth.Token

isSuperuser() - Method in class org.molgenis.auth.User

isTwoFactorAuthentication() - Method in class org.molgenis.auth.User

iterator() - Method in class org.molgenis.data.RepositorySecurityDecorator

iterator() - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

iterator() - Method in class org.molgenis.data.security.meta.EntityTypeRepositorySecurityDecorator

iterator() - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator

L

LANGUAGECODE - Static variable in class org.molgenis.auth.UserMetaData

LASTNAME - Static variable in class org.molgenis.auth.UserMetaData

M

MIDDLENAMES - Static variable in class org.molgenis.auth.UserMetaData

N

NAME - Static variable in class org.molgenis.auth.GroupMetaData

O

org.molgenis.auth - package org.molgenis.auth

org.molgenis.data - package org.molgenis.data

org.molgenis.data.aggregation - package org.molgenis.data.aggregation

org.molgenis.data.security - package org.molgenis.data.security

org.molgenis.data.security.meta - package org.molgenis.data.security.meta

org.molgenis.security.owned - package org.molgenis.security.owned

org.molgenis.security.permission - package org.molgenis.security.permission

org.molgenis.security.user - package org.molgenis.security.user

org.molgenis.util - package org.molgenis.util

OWNED - Static variable in class org.molgenis.security.owned.OwnedEntityType

OwnedEntity - Class in org.molgenis.security.owned

Base class for owned entities.

OwnedEntity(Entity) - Constructor for class org.molgenis.security.owned.OwnedEntity

OwnedEntity(EntityType) - Constructor for class org.molgenis.security.owned.OwnedEntity

OwnedEntity(Object, EntityType) - Constructor for class org.molgenis.security.owned.OwnedEntity

OwnedEntityRepositoryDecorator - Class in org.molgenis.security.owned

RepositoryDecorator that works on EntityType that extends OwnedEntityType.

OwnedEntityRepositoryDecorator(Repository<Entity>) - Constructor for class org.molgenis.security.owned.OwnedEntityRepositoryDecorator

OwnedEntityType - Class in org.molgenis.security.owned

Defines an abstract EntityType for entities that have an 'owner'.

OwnedEntityType(SecurityPackage) - Constructor for class org.molgenis.security.owned.OwnedEntityType

OWNER_USERNAME - Static variable in class org.molgenis.security.owned.OwnedEntityType

P

PACKAGE_SECURITY - Static variable in class org.molgenis.auth.SecurityPackage

PASSWORD_ - Static variable in class org.molgenis.auth.UserMetaData

PermissionSystemService - Interface in org.molgenis.security.permission

Updates current user permissions as system user, changes take effect immediately.

PHONE - Static variable in class org.molgenis.auth.UserMetaData

Q

query() - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator

R

RepositorySecurityDecorator - Class in org.molgenis.data

Repository decorated that validates that current user has permission to perform an operation for an entity type.

RepositorySecurityDecorator(Repository<Entity>) - Constructor for class org.molgenis.data.RepositorySecurityDecorator

ROLE - Static variable in class org.molgenis.auth.AuthorityMetaData

ROLE - Static variable in class org.molgenis.auth.UserMetaData

S

SecurityDecoratorUtils - Class in org.molgenis.util

SecurityDecoratorUtils() - Constructor for class org.molgenis.util.SecurityDecoratorUtils

SecurityPackage - Class in org.molgenis.auth

SecurityPackage(PackageMetadata, RootSystemPackage) - Constructor for class org.molgenis.auth.SecurityPackage

setActivationCode(String) - Method in class org.molgenis.auth.User

setActive(boolean) - Method in class org.molgenis.auth.Group

setActive(Boolean) - Method in class org.molgenis.auth.User

setAddress(String) - Method in class org.molgenis.auth.User

setAffiliation(String) - Method in class org.molgenis.auth.User

setChangePassword(Boolean) - Method in class org.molgenis.auth.User

setCity(String) - Method in class org.molgenis.auth.User

setCountry(String) - Method in class org.molgenis.auth.User

setCreationDate(Instant) - Method in class org.molgenis.auth.Token

setDepartment(String) - Method in class org.molgenis.auth.User

setDescription(String) - Method in class org.molgenis.auth.Token

setEmail(String) - Method in class org.molgenis.auth.User

setExpirationDate(Instant) - Method in class org.molgenis.auth.Token

setFax(String) - Method in class org.molgenis.auth.User

setFirstName(String) - Method in class org.molgenis.auth.User

setGoogleAccountId(String) - Method in class org.molgenis.auth.User

setGroup(Group) - Method in class org.molgenis.auth.GroupAuthority

setGroup(Group) - Method in class org.molgenis.auth.GroupMember

setId(String) - Method in class org.molgenis.auth.Group

setId(String) - Method in class org.molgenis.auth.GroupAuthority

setId(String) - Method in class org.molgenis.auth.GroupMember

setId(String) - Method in class org.molgenis.auth.Token

setId(String) - Method in class org.molgenis.auth.User

setId(String) - Method in class org.molgenis.auth.UserAuthority

setLanguageCode(String) - Method in class org.molgenis.auth.User

setLastName(String) - Method in class org.molgenis.auth.User

setMiddleNames(String) - Method in class org.molgenis.auth.User

setName(String) - Method in class org.molgenis.auth.Group

setOwnerUsername(String) - Method in class org.molgenis.security.owned.OwnedEntity

setPassword(String) - Method in class org.molgenis.auth.User

setPhone(String) - Method in class org.molgenis.auth.User

setRole(String) - Method in class org.molgenis.auth.Authority

setRole(String) - Method in class org.molgenis.auth.User

setSuperuser(Boolean) - Method in class org.molgenis.auth.User

setTitle(String) - Method in class org.molgenis.auth.User

setToken(String) - Method in class org.molgenis.auth.Token

setTollFreePhone(String) - Method in class org.molgenis.auth.User

setTwoFactorAuthentication(boolean) - Method in class org.molgenis.auth.User

setUser(User) - Method in class org.molgenis.auth.GroupMember

setUser(User) - Method in class org.molgenis.auth.Token

setUser(User) - Method in class org.molgenis.auth.UserAuthority

setUsername(String) - Method in class org.molgenis.auth.User

SIMPLE_NAME - Static variable in class org.molgenis.auth.SecurityPackage

SUPERUSER - Static variable in class org.molgenis.auth.UserMetaData

SystemEntityTypeRegistryImpl - Class in org.molgenis.data.security

T

TITLE - Static variable in class org.molgenis.auth.UserMetaData

Token - Class in org.molgenis.auth

Token(Entity) - Constructor for class org.molgenis.auth.Token

Token(EntityType) - Constructor for class org.molgenis.auth.Token

Token(String, EntityType) - Constructor for class org.molgenis.auth.Token

TOKEN - Static variable in class org.molgenis.auth.TokenMetaData

TOKEN_ATTR - Static variable in class org.molgenis.auth.TokenMetaData

TokenFactory - Class in org.molgenis.auth

TokenMetaData - Class in org.molgenis.auth

TOLLFREEPHONE - Static variable in class org.molgenis.auth.UserMetaData

TWO_FACTOR_AUTHENTICATION - Static variable in class org.molgenis.auth.UserMetaData

U

update(User) - Method in class org.molgenis.auth.UserRepositoryDecorator

update(Stream<User>) - Method in class org.molgenis.auth.UserRepositoryDecorator

update(Entity) - Method in class org.molgenis.data.RepositorySecurityDecorator

update(Stream<Entity>) - Method in class org.molgenis.data.RepositorySecurityDecorator

update(Attribute) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

update(Stream<Attribute>) - Method in class org.molgenis.data.security.meta.AttributeRepositorySecurityDecorator

update(EntityType) - Method in class org.molgenis.data.security.meta.EntityTypeRepositorySecurityDecorator

update(Stream<EntityType>) - Method in class org.molgenis.data.security.meta.EntityTypeRepositorySecurityDecorator

update(Entity) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator

update(Stream<Entity>) - Method in class org.molgenis.security.owned.OwnedEntityRepositoryDecorator

update(User) - Method in interface org.molgenis.security.user.UserService

Update user

update(User) - Method in class org.molgenis.security.user.UserServiceImpl

USER - Static variable in class org.molgenis.auth.GroupMemberMetaData

USER - Static variable in class org.molgenis.auth.TokenMetaData

User - Class in org.molgenis.auth

User(Entity) - Constructor for class org.molgenis.auth.User

User(EntityType) - Constructor for class org.molgenis.auth.User

User(String, EntityType) - Constructor for class org.molgenis.auth.User

USER - Static variable in class org.molgenis.auth.UserAuthorityMetaData

USER - Static variable in class org.molgenis.auth.UserMetaData

USER_AUTHORITY - Static variable in class org.molgenis.auth.UserAuthorityMetaData

UserAuthority - Class in org.molgenis.auth

UserAuthority(Entity) - Constructor for class org.molgenis.auth.UserAuthority

UserAuthority(EntityType) - Constructor for class org.molgenis.auth.UserAuthority

UserAuthority(String, EntityType) - Constructor for class org.molgenis.auth.UserAuthority

UserAuthorityFactory - Class in org.molgenis.auth

UserAuthorityMetaData - Class in org.molgenis.auth

UserFactory - Class in org.molgenis.auth

UserMetaData - Class in org.molgenis.auth

UserMetaData(SecurityPackage) - Constructor for class org.molgenis.auth.UserMetaData

USERNAME - Static variable in class org.molgenis.auth.UserMetaData

UserRepositoryDecorator - Class in org.molgenis.auth

UserRepositoryDecorator(Repository<User>, UserAuthorityFactory, DataService, PasswordEncoder) - Constructor for class org.molgenis.auth.UserRepositoryDecorator

UserRepositoryDecoratorFactory - Class in org.molgenis.auth

UserRepositoryDecoratorFactory(UserMetaData, UserAuthorityFactory, DataService, PasswordEncoder) - Constructor for class org.molgenis.auth.UserRepositoryDecoratorFactory

UserService - Interface in org.molgenis.security.user

UserServiceImpl - Class in org.molgenis.security.user

Manage user in groups

UserServiceImpl(DataService) - Constructor for class org.molgenis.security.user.UserServiceImpl

V

validatePermission(EntityType, Permission) - Static method in class org.molgenis.util.SecurityDecoratorUtils

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