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A

addUpgrade(MolgenisUpgrade) - Method in class org.molgenis.migrate.version.MolgenisUpgradeServiceImpl

C

CURRENT_VERSION - Static variable in class org.molgenis.migrate.version.MolgenisVersionService

D

DB_KEY - Static variable in class org.molgenis.migrate.version.MigrationUtils

G

getDatabaseName() - Static method in class org.molgenis.migrate.version.MigrationUtils

getMolgenisServerProperties() - Static method in class org.molgenis.migrate.version.MigrationUtils

getMolgenisServerPropertiesFile() - Static method in class org.molgenis.migrate.version.MigrationUtils

getMolgenisVersionFromServerProperties() - Method in class org.molgenis.migrate.version.MolgenisVersionService

Get the molgenis version from the molgenis server properties.

getVersion() - Static method in class org.molgenis.migrate.version.MigrationUtils

M

MigrationUtils - Class in org.molgenis.migrate.version

Some utilities for the migration steps that need to access molgenis-server.properties

MigrationUtils() - Constructor for class org.molgenis.migrate.version.MigrationUtils

MOLGENIS_HOME_KEY - Static variable in class org.molgenis.migrate.version.MigrationUtils

MolgenisUpgradeServiceImpl - Class in org.molgenis.migrate.version

Upgrades the data backends to the current version.

MolgenisUpgradeServiceImpl(MolgenisVersionService) - Constructor for class org.molgenis.migrate.version.MolgenisUpgradeServiceImpl

MolgenisVersionService - Class in org.molgenis.migrate.version

Get the Molgenis version from molgenis-server.properties or, in absence there, from a DataSource.

MolgenisVersionService(DataSource) - Constructor for class org.molgenis.migrate.version.MolgenisVersionService

O

onApplicationEvent(ContextRefreshedEvent) - Method in class org.molgenis.migrate.version.v1_14.Step23RebuildElasticsearchIndex

onApplicationEvent(ContextRefreshedEvent) - Method in class org.molgenis.migrate.version.v1_15.Step25LanguagesPermissions

org.molgenis.migrate.version - package org.molgenis.migrate.version

org.molgenis.migrate.version.v1_11 - package org.molgenis.migrate.version.v1_11

org.molgenis.migrate.version.v1_13 - package org.molgenis.migrate.version.v1_13

org.molgenis.migrate.version.v1_14 - package org.molgenis.migrate.version.v1_14

org.molgenis.migrate.version.v1_15 - package org.molgenis.migrate.version.v1_15

org.molgenis.migrate.version.v1_16 - package org.molgenis.migrate.version.v1_16

org.molgenis.migrate.version.v1_17 - package org.molgenis.migrate.version.v1_17

org.molgenis.migrate.version.v1_19 - package org.molgenis.migrate.version.v1_19

org.molgenis.migrate.version.v1_21 - package org.molgenis.migrate.version.v1_21

org.molgenis.migrate.version.v1_22 - package org.molgenis.migrate.version.v1_22

S

Step20RebuildElasticsearchIndex - Class in org.molgenis.migrate.version.v1_11

Rebuilds Elasticsearch index due to changes in which entities are (not) stored in the Elasticsearch index

Step20RebuildElasticsearchIndex() - Constructor for class org.molgenis.migrate.version.v1_11.Step20RebuildElasticsearchIndex

Step21SetLoggingEventBackend - Class in org.molgenis.migrate.version.v1_11

Migration step needed after fix for #3913 "LoggingEvents aren't stored"

Step21SetLoggingEventBackend(DataSource) - Constructor for class org.molgenis.migrate.version.v1_11.Step21SetLoggingEventBackend

Step22RemoveDiseaseMatcher - Class in org.molgenis.migrate.version.v1_13

Step22RemoveDiseaseMatcher(DataSource) - Constructor for class org.molgenis.migrate.version.v1_13.Step22RemoveDiseaseMatcher

Step23RebuildElasticsearchIndex - Class in org.molgenis.migrate.version.v1_14

Rebuilds Elasticsearch index due to changes in mapping for integers fields

Step23RebuildElasticsearchIndex(DataService) - Constructor for class org.molgenis.migrate.version.v1_14.Step23RebuildElasticsearchIndex

Step24UpdateApplicationSettings - Class in org.molgenis.migrate.version.v1_15

Step24UpdateApplicationSettings(DataSource, IdGenerator) - Constructor for class org.molgenis.migrate.version.v1_15.Step24UpdateApplicationSettings

Step25LanguagesPermissions - Class in org.molgenis.migrate.version.v1_15

Step25LanguagesPermissions(DataService) - Constructor for class org.molgenis.migrate.version.v1_15.Step25LanguagesPermissions

Step26migrateJpaBackend - Class in org.molgenis.migrate.version.v1_16

Step26migrateJpaBackend(DataSource, String, IdGenerator) - Constructor for class org.molgenis.migrate.version.v1_16.Step26migrateJpaBackend

Step27MetaDataAttributeRoles - Class in org.molgenis.migrate.version.v1_17

Step27MetaDataAttributeRoles(DataSource) - Constructor for class org.molgenis.migrate.version.v1_17.Step27MetaDataAttributeRoles

Step28MigrateSorta - Class in org.molgenis.migrate.version.v1_19

Migrates SORTA to version 1.19 for M4094.

Step28MigrateSorta(DataSource) - Constructor for class org.molgenis.migrate.version.v1_19.Step28MigrateSorta

Step29MigrateJobExecutionProgressMessage - Class in org.molgenis.migrate.version.v1_21

Changes JobExecution PROGRESS_MESSAGE attribute datatype from STRING to TEXT.

Step29MigrateJobExecutionProgressMessage(DataSource) - Constructor for class org.molgenis.migrate.version.v1_21.Step29MigrateJobExecutionProgressMessage

Step30MigrateJobExecutionUser - Class in org.molgenis.migrate.version.v1_21

Changes JobExecution user columns from foreign key to MolgenisUser to a simple userName.

Step30MigrateJobExecutionUser(DataSource) - Constructor for class org.molgenis.migrate.version.v1_21.Step30MigrateJobExecutionUser

Step31UpdateApplicationSettings - Class in org.molgenis.migrate.version.v1_22

Step31UpdateApplicationSettings(DataSource, IdGenerator) - Constructor for class org.molgenis.migrate.version.v1_22.Step31UpdateApplicationSettings

U

updateToCurrentVersion() - Method in class org.molgenis.migrate.version.MolgenisVersionService

updateToVersion(int) - Method in class org.molgenis.migrate.version.MolgenisVersionService

upgrade() - Method in class org.molgenis.migrate.version.MolgenisUpgradeServiceImpl

Executes MOLGENIS MetaData version upgrades.

upgrade() - Method in class org.molgenis.migrate.version.v1_11.Step20RebuildElasticsearchIndex

upgrade() - Method in class org.molgenis.migrate.version.v1_11.Step21SetLoggingEventBackend

upgrade() - Method in class org.molgenis.migrate.version.v1_13.Step22RemoveDiseaseMatcher

upgrade() - Method in class org.molgenis.migrate.version.v1_14.Step23RebuildElasticsearchIndex

upgrade() - Method in class org.molgenis.migrate.version.v1_15.Step24UpdateApplicationSettings

upgrade() - Method in class org.molgenis.migrate.version.v1_15.Step25LanguagesPermissions

upgrade() - Method in class org.molgenis.migrate.version.v1_16.Step26migrateJpaBackend

upgrade() - Method in class org.molgenis.migrate.version.v1_17.Step27MetaDataAttributeRoles

upgrade() - Method in class org.molgenis.migrate.version.v1_19.Step28MigrateSorta

upgrade() - Method in class org.molgenis.migrate.version.v1_21.Step29MigrateJobExecutionProgressMessage

upgrade() - Method in class org.molgenis.migrate.version.v1_21.Step30MigrateJobExecutionUser

upgrade() - Method in class org.molgenis.migrate.version.v1_22.Step31UpdateApplicationSettings

V

VERSION_KEY - Static variable in class org.molgenis.migrate.version.MigrationUtils

A C D G M O S U V