A B C D E F G H I O P R S T U V W
All Classes All Packages

A

ACTION_ORDER - Static variable in class org.molgenis.data.index.meta.IndexActionMetadata

The order in which the action is registered within its IndexActionJob

add(Stream<Entity>) - Method in class org.molgenis.data.index.IndexActionRepositoryDecorator

add(Entity) - Method in class org.molgenis.data.index.IndexActionRepositoryDecorator

addAttribute(EntityType, Attribute) - Method in class org.molgenis.data.index.IndexActionRepositoryCollectionDecorator

addExcludedEntity(String) - Method in interface org.molgenis.data.index.IndexActionRegisterService

Excludes an entity from being indexed.

addExcludedEntity(String) - Method in class org.molgenis.data.index.IndexActionRegisterServiceImpl

aggregate(EntityType, AggregateQuery) - Method in interface org.molgenis.data.index.SearchService

B

bootstrap() - Method in class org.molgenis.data.index.bootstrap.IndexBootstrapper

C

CANCELED - org.molgenis.data.index.meta.IndexActionMetadata.IndexStatus

index action is canceled

cleanupJobExecutions() - Method in interface org.molgenis.data.index.job.IndexJobScheduler

cleanupJobExecutions() - Method in class org.molgenis.data.index.job.IndexJobSchedulerImpl

Cleans up successful IndexJobExecutions that finished longer than five minutes ago.

commitTransaction(String) - Method in class org.molgenis.data.index.transaction.IndexTransactionListener

count(EntityType) - Method in interface org.molgenis.data.index.SearchService

count(EntityType, Query<Entity>) - Method in interface org.molgenis.data.index.SearchService

COUNT - Static variable in class org.molgenis.data.index.meta.IndexActionGroupMetadata

The amount of actions that are grouped together.

create(Repository<Entity>) - Method in class org.molgenis.data.index.IndexedRepositoryDecoratorFactory

createIndex(EntityType) - Method in interface org.molgenis.data.index.IndexService

createRepository(EntityType) - Method in class org.molgenis.data.index.IndexActionRepositoryCollectionDecorator

createSingleEntityImpact(String, Object) - Static method in class org.molgenis.data.index.Impact

createWholeRepositoryImpact(String) - Static method in class org.molgenis.data.index.Impact

CREATION_DATE_TIME - Static variable in class org.molgenis.data.index.meta.IndexActionMetadata

The creation time of the index action.

D

delete(Stream<Entity>) - Method in class org.molgenis.data.index.IndexActionRepositoryDecorator

delete(Entity) - Method in class org.molgenis.data.index.IndexActionRepositoryDecorator

delete(EntityType, Stream<? extends Entity>) - Method in interface org.molgenis.data.index.IndexService

delete(EntityType, Entity) - Method in interface org.molgenis.data.index.IndexService

deleteAll() - Method in class org.molgenis.data.index.IndexActionRepositoryDecorator

deleteAll(Stream<Object>) - Method in class org.molgenis.data.index.IndexActionRepositoryDecorator

deleteAll(EntityType, Stream<Object>) - Method in interface org.molgenis.data.index.IndexService

deleteAttribute(EntityType, Attribute) - Method in class org.molgenis.data.index.IndexActionRepositoryCollectionDecorator

deleteById(Object) - Method in class org.molgenis.data.index.IndexActionRepositoryDecorator

deleteById(EntityType, Object) - Method in interface org.molgenis.data.index.IndexService

deleteIndex(EntityType) - Method in interface org.molgenis.data.index.IndexService

deleteRepository(EntityType) - Method in class org.molgenis.data.index.IndexActionRepositoryCollectionDecorator

doCleanupAfterCompletion(String) - Method in class org.molgenis.data.index.transaction.IndexTransactionListener

E

ENTITY_ID - Static variable in class org.molgenis.data.index.meta.IndexActionMetadata

Entity is filled when only one row of the entity "entityFullName" is indexed

ENTITY_TYPE_ID - Static variable in class org.molgenis.data.index.meta.IndexActionMetadata

The name of the entity type ID that needs to be indexed

equals(Object) - Method in class org.molgenis.data.index.meta.IndexAction

Returns whether two index actions are equal ignoring the auto id

executeJob(Progress, String) - Method in class org.molgenis.data.index.job.IndexJobService

F

FAILED - org.molgenis.data.index.meta.IndexActionMetadata.IndexStatus

index action failed

FINISHED - org.molgenis.data.index.meta.IndexActionMetadata.IndexStatus

index action is finished

forgetIndexActions(String) - Method in interface org.molgenis.data.index.IndexActionRegisterService

Removes all index actions registered for a transaction.

forgetIndexActions(String) - Method in class org.molgenis.data.index.IndexActionRegisterServiceImpl

G

getActionOrder() - Method in class org.molgenis.data.index.meta.IndexAction

getCapabilities() - Method in class org.molgenis.data.index.IndexActionRepositoryDecorator

getCount() - Method in class org.molgenis.data.index.meta.IndexActionGroup

getDependencies() - Method in class org.molgenis.data.index.job.IndexJobExecutionMetadata

getDirtyEntities() - Method in class org.molgenis.data.index.IndexActionRegisterServiceImpl

getDirtyRepositories() - Method in class org.molgenis.data.index.IndexActionRegisterServiceImpl

getEntirelyDirtyRepositories() - Method in class org.molgenis.data.index.IndexActionRegisterServiceImpl

getEntityId() - Method in class org.molgenis.data.index.meta.IndexAction

getEntityTypeId() - Method in class org.molgenis.data.index.Impact

getEntityTypeId() - Method in class org.molgenis.data.index.meta.IndexAction

getId() - Method in class org.molgenis.data.index.Impact

getId() - Method in class org.molgenis.data.index.meta.IndexAction

getId() - Method in class org.molgenis.data.index.meta.IndexActionGroup

getIndexActionGroup() - Method in class org.molgenis.data.index.meta.IndexAction

getIndexActionJobID() - Method in class org.molgenis.data.index.job.IndexJobExecution

getIndexStatus() - Method in class org.molgenis.data.index.meta.IndexAction

H

hashCode() - Method in class org.molgenis.data.index.meta.IndexAction

Returns a hash code value for this index action ignoring the auto id

hasIndex(EntityType) - Method in interface org.molgenis.data.index.IndexService

I

ID - Static variable in class org.molgenis.data.index.job.IndexJobExecutionMetadata

Example: Transaction id can be used to group all actions into one transaction.

ID - Static variable in class org.molgenis.data.index.meta.IndexActionGroupMetadata

Example: Transaction id can be used to group all actions into one transaction.

ID - Static variable in class org.molgenis.data.index.meta.IndexActionMetadata

Is auto generated

Impact - Class in org.molgenis.data.index

Value object to store the impact of changes.

Impact() - Constructor for class org.molgenis.data.index.Impact

index(EntityType, Stream<? extends Entity>) - Method in interface org.molgenis.data.index.IndexService

index(EntityType, Entity) - Method in interface org.molgenis.data.index.IndexService

INDEX_ACTION - Static variable in class org.molgenis.data.index.meta.IndexActionMetadata

INDEX_ACTION_GROUP - Static variable in class org.molgenis.data.index.meta.IndexActionGroupMetadata

INDEX_ACTION_GROUP_ATTR - Static variable in class org.molgenis.data.index.meta.IndexActionMetadata

The group that this index action belongs to.

INDEX_ACTION_JOB_ID - Static variable in class org.molgenis.data.index.job.IndexJobExecutionMetadata

INDEX_JOB_EXECUTION - Static variable in class org.molgenis.data.index.job.IndexJobExecutionMetadata

INDEX_STATUS - Static variable in class org.molgenis.data.index.meta.IndexActionMetadata

Enum: the status of index action.

IndexAction - Class in org.molgenis.data.index.meta

IndexAction(String, EntityType) - Constructor for class org.molgenis.data.index.meta.IndexAction

IndexAction(Entity) - Constructor for class org.molgenis.data.index.meta.IndexAction

IndexAction(EntityType) - Constructor for class org.molgenis.data.index.meta.IndexAction

IndexActionFactory - Class in org.molgenis.data.index.meta

IndexActionGroup - Class in org.molgenis.data.index.meta

IndexActionGroup(String, EntityType) - Constructor for class org.molgenis.data.index.meta.IndexActionGroup

IndexActionGroup(Entity) - Constructor for class org.molgenis.data.index.meta.IndexActionGroup

IndexActionGroup(EntityType) - Constructor for class org.molgenis.data.index.meta.IndexActionGroup

IndexActionGroupFactory - Class in org.molgenis.data.index.meta

IndexActionGroupMetadata - Class in org.molgenis.data.index.meta

This entity is used to group the index actions.

IndexActionGroupMetadata(IndexPackage) - Constructor for class org.molgenis.data.index.meta.IndexActionGroupMetadata

IndexActionMetadata - Class in org.molgenis.data.index.meta

The index action is used to describe the action that needs to be done to make a Repository's index consistent again.

IndexActionMetadata(IndexPackage, IndexActionGroupMetadata) - Constructor for class org.molgenis.data.index.meta.IndexActionMetadata

IndexActionMetadata.IndexStatus - Enum in org.molgenis.data.index.meta

Index action status

IndexActionRegisterService - Interface in org.molgenis.data.index

Registers changes made to an indexed repository that need to be fixed by indexing the relevant data.

IndexActionRegisterServiceImpl - Class in org.molgenis.data.index

Registers changes made to an indexed repository that need to be fixed by indexing the relevant data.

IndexActionRepositoryCollectionDecorator - Class in org.molgenis.data.index

Decorator around a Repository that registers changes made to its data with the IndexActionRegisterServiceImpl.

IndexActionRepositoryCollectionDecorator(RepositoryCollection, IndexActionRegisterService) - Constructor for class org.molgenis.data.index.IndexActionRepositoryCollectionDecorator

IndexActionRepositoryDecorator - Class in org.molgenis.data.index

Repository decorator that registers changes with a IndexActionRegisterServiceImpl.

IndexActionRepositoryDecorator(Repository<Entity>, IndexActionRegisterService) - Constructor for class org.molgenis.data.index.IndexActionRepositoryDecorator

IndexAlreadyExistsException - Exception in org.molgenis.data.index.exception

Deprecated.

use class that extends from CodedRuntimeException

IndexAlreadyExistsException(String) - Constructor for exception org.molgenis.data.index.exception.IndexAlreadyExistsException

Deprecated.

IndexBootstrapper - Class in org.molgenis.data.index.bootstrap

IndexBootstrapper(MetaDataService, IndexService, IndexActionRegisterService, DataService, AttributeMetadata) - Constructor for class org.molgenis.data.index.bootstrap.IndexBootstrapper

IndexConfig - Class in org.molgenis.data.index

IndexConfig(IndexActionRegisterService, TransactionManager, DataService, IndexService, IndexJobExecutionFactory, EntityTypeFactory, JobExecutor) - Constructor for class org.molgenis.data.index.IndexConfig

IndexedRepositoryDecoratorFactory - Class in org.molgenis.data.index

IndexException - Exception in org.molgenis.data.index.exception

Deprecated.

use class that extends from CodedRuntimeException

IndexException(String) - Constructor for exception org.molgenis.data.index.exception.IndexException

Deprecated.

IndexException(String, Throwable) - Constructor for exception org.molgenis.data.index.exception.IndexException

Deprecated.

IndexingStrategy - Class in org.molgenis.data.index

Determines the impact of changes.

IndexingStrategy() - Constructor for class org.molgenis.data.index.IndexingStrategy

IndexJobExecution - Class in org.molgenis.data.index.job

This entity is used to keep track of the status of the execution of a reindex job.

IndexJobExecution(String, EntityType) - Constructor for class org.molgenis.data.index.job.IndexJobExecution

IndexJobExecution(Entity) - Constructor for class org.molgenis.data.index.job.IndexJobExecution

IndexJobExecution(EntityType) - Constructor for class org.molgenis.data.index.job.IndexJobExecution

IndexJobExecutionFactory - Class in org.molgenis.data.index.job

IndexJobExecutionMetadata - Class in org.molgenis.data.index.job

This entity is used to track the progress of the execution of a IndexActionJob.

IndexJobExecutionMetadata(JobPackage, JobExecutionMetaData) - Constructor for class org.molgenis.data.index.job.IndexJobExecutionMetadata

indexJobFactory() - Method in class org.molgenis.data.index.IndexConfig

indexJobScheduler() - Method in class org.molgenis.data.index.IndexConfig

IndexJobScheduler - Interface in org.molgenis.data.index.job

Schedules IndexJobServices.

IndexJobSchedulerImpl - Class in org.molgenis.data.index.job

IndexJobSchedulerImpl(DataService, IndexJobExecutionFactory, JobExecutor) - Constructor for class org.molgenis.data.index.job.IndexJobSchedulerImpl

indexJobService() - Method in class org.molgenis.data.index.IndexConfig

IndexJobService - Class in org.molgenis.data.index.job

Executes the IndexActions stored in an IndexActionGroup.

IndexJobService(DataService, IndexService, EntityTypeFactory) - Constructor for class org.molgenis.data.index.job.IndexJobService

IndexPackage - Class in org.molgenis.data.index.meta

IndexPackage(PackageMetadata, RootSystemPackage) - Constructor for class org.molgenis.data.index.meta.IndexPackage

IndexService - Interface in org.molgenis.data.index

IndexStatus - Class in org.molgenis.data.index.job

Keeps track of outstanding index actions.

IndexStatus() - Constructor for class org.molgenis.data.index.job.IndexStatus

indexTransactionListener() - Method in class org.molgenis.data.index.IndexConfig

IndexTransactionListener - Class in org.molgenis.data.index.transaction

IndexTransactionListener(IndexJobScheduler, IndexActionRegisterService) - Constructor for class org.molgenis.data.index.transaction.IndexTransactionListener

init() - Method in class org.molgenis.data.index.job.IndexJobExecutionMetadata

init() - Method in class org.molgenis.data.index.meta.IndexActionGroupMetadata

init() - Method in class org.molgenis.data.index.meta.IndexActionMetadata

init() - Method in class org.molgenis.data.index.meta.IndexPackage

isEntireRepositoryDirty(EntityType) - Method in class org.molgenis.data.index.IndexActionRegisterServiceImpl

isEntityDirty(EntityKey) - Method in class org.molgenis.data.index.IndexActionRegisterServiceImpl

isRepositoryCompletelyClean(EntityType) - Method in class org.molgenis.data.index.IndexActionRegisterServiceImpl

isSingleEntity() - Method in class org.molgenis.data.index.Impact

isWholeRepository() - Method in class org.molgenis.data.index.Impact

isWholeRepository() - Method in class org.molgenis.data.index.meta.IndexAction

O

org.molgenis.data.index - package org.molgenis.data.index

org.molgenis.data.index.bootstrap - package org.molgenis.data.index.bootstrap

org.molgenis.data.index.exception - package org.molgenis.data.index.exception

org.molgenis.data.index.job - package org.molgenis.data.index.job

org.molgenis.data.index.meta - package org.molgenis.data.index.meta

org.molgenis.data.index.transaction - package org.molgenis.data.index.transaction

P

PACKAGE_INDEX - Static variable in class org.molgenis.data.index.meta.IndexPackage

PENDING - org.molgenis.data.index.meta.IndexActionMetadata.IndexStatus

index action is just created and is not yet processed

R

rebuildIndex(Repository<? extends Entity>) - Method in interface org.molgenis.data.index.IndexService

refreshIndex() - Method in interface org.molgenis.data.index.IndexService

register() - Method in class org.molgenis.data.index.IndexConfig

register(EntityType, Object) - Method in interface org.molgenis.data.index.IndexActionRegisterService

Log and create locks for an add/update/delete operation on a Repository

register(EntityType, Object) - Method in class org.molgenis.data.index.IndexActionRegisterServiceImpl

rollbackTransaction(String) - Method in class org.molgenis.data.index.transaction.IndexTransactionListener

S

scheduleIndexJob(String) - Method in interface org.molgenis.data.index.job.IndexJobScheduler

Schedules a job to rebuild the index for all changes made in the context of a specific transaction.

scheduleIndexJob(String) - Method in class org.molgenis.data.index.job.IndexJobSchedulerImpl

search(EntityType, Query<Entity>) - Method in interface org.molgenis.data.index.SearchService

searchOne(EntityType, Query<Entity>) - Method in interface org.molgenis.data.index.SearchService

SearchService - Interface in org.molgenis.data.index

setActionOrder(int) - Method in class org.molgenis.data.index.meta.IndexAction

setCount(int) - Method in class org.molgenis.data.index.meta.IndexActionGroup

setEntityId(String) - Method in class org.molgenis.data.index.meta.IndexAction

setEntityTypeId(String) - Method in class org.molgenis.data.index.meta.IndexAction

setId(String) - Method in class org.molgenis.data.index.meta.IndexAction

setIndexActionGroup(IndexActionGroup) - Method in class org.molgenis.data.index.meta.IndexAction

setIndexActionJobID(String) - Method in class org.molgenis.data.index.job.IndexJobExecution

setIndexStatus(IndexActionMetadata.IndexStatus) - Method in class org.molgenis.data.index.meta.IndexAction

SIMPLE_NAME - Static variable in class org.molgenis.data.index.meta.IndexPackage

STARTED - org.molgenis.data.index.meta.IndexActionMetadata.IndexStatus

index action is started

storeIndexActions(String) - Method in interface org.molgenis.data.index.IndexActionRegisterService

Stores the index actions in the repository.

storeIndexActions(String) - Method in class org.molgenis.data.index.IndexActionRegisterServiceImpl

T

toEntityKey() - Method in class org.molgenis.data.index.Impact

U

UnknownIndexException - Exception in org.molgenis.data.index.exception

Deprecated.

use class that extends from CodedRuntimeException

UnknownIndexException(String) - Constructor for exception org.molgenis.data.index.exception.UnknownIndexException

Deprecated.

UnknownIndexException(String[]) - Constructor for exception org.molgenis.data.index.exception.UnknownIndexException

Deprecated.

update(Stream<Entity>) - Method in class org.molgenis.data.index.IndexActionRepositoryDecorator

update(Entity) - Method in class org.molgenis.data.index.IndexActionRepositoryDecorator

updateAttribute(EntityType, Attribute, Attribute) - Method in class org.molgenis.data.index.IndexActionRepositoryCollectionDecorator

updateRepository(EntityType, EntityType) - Method in class org.molgenis.data.index.IndexActionRepositoryCollectionDecorator

V

valueOf(String) - Static method in enum org.molgenis.data.index.meta.IndexActionMetadata.IndexStatus

Returns the enum constant of this type with the specified name.

values() - Static method in enum org.molgenis.data.index.meta.IndexActionMetadata.IndexStatus

Returns an array containing the constants of this enum type, in the order they are declared.

W

waitForAllIndicesStable() - Method in interface org.molgenis.data.index.job.IndexJobScheduler

waitForAllIndicesStable() - Method in class org.molgenis.data.index.job.IndexJobSchedulerImpl

waitForIndexToBeStableIncludingReferences(EntityType) - Method in interface org.molgenis.data.index.job.IndexJobScheduler

waitForIndexToBeStableIncludingReferences(EntityType) - Method in class org.molgenis.data.index.job.IndexJobSchedulerImpl

A B C D E F G H I O P R S T U V W
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