org.molgenis.data.csv

Class CsvRepositoryCollection

java.lang.Object

org.molgenis.data.support.AbstractRepositoryCollection

org.molgenis.data.support.FileRepositoryCollection

org.molgenis.data.csv.CsvRepositoryCollection

All Implemented Interfaces:

Iterable<Repository<Entity>>, RepositoryCollection

public class CsvRepositoryCollection
extends FileRepositoryCollection

Reads csv and tsv files. Can be bundled together in a zipfile.

The exposes the files as Repository. The names of the repositories are the names of the files without the extension

Field Summary

Fields

Modifier and Type	Field and Description
static String	NAME

Fields inherited from class org.molgenis.data.support.FileRepositoryCollection

cellProcessors

Constructor Summary

Constructors

Constructor and Description
CsvRepositoryCollection(File file)
CsvRepositoryCollection(File file, CellProcessor... cellProcessors)

Method Summary

Modifier and Type	Method and Description
Iterable<String>	getEntityIds()
String	getName()
Repository<Entity>	getRepository(String name)
boolean	hasRepository(EntityType entityType)
boolean	hasRepository(String name)
void	init()
Iterator<Repository<Entity>>	iterator()
void	setAttributeFactory(AttributeFactory attrMetaFactory)
void	setEntityTypeFactory(EntityTypeFactory entityTypeFactory)

Methods inherited from class org.molgenis.data.support.FileRepositoryCollection

addCellProcessor, getFileNameExtensions

Methods inherited from class org.molgenis.data.support.AbstractRepositoryCollection

addAttribute, createRepository, deleteAttribute, deleteRepository, getCapabilities, getRepository, updateAttribute, updateRepository

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.molgenis.data.RepositoryCollection

stream

Methods inherited from interface java.lang.Iterable

forEach, spliterator

Field Detail

NAME

public static final String NAME

See Also:

Constant Field Values

Constructor Detail

CsvRepositoryCollection

public CsvRepositoryCollection(File file)
                        throws MolgenisInvalidFormatException,
                               IOException

Throws:

MolgenisInvalidFormatException

IOException

CsvRepositoryCollection

public CsvRepositoryCollection(File file,
                               CellProcessor... cellProcessors)
                        throws MolgenisInvalidFormatException,
                               IOException

Throws:

MolgenisInvalidFormatException

IOException

Method Detail

init

public void init()
          throws IOException

Specified by:

init in class FileRepositoryCollection

Throws:

IOException

getEntityIds

public Iterable<String> getEntityIds()

getRepository

public Repository<Entity> getRepository(String name)

getName

public String getName()

iterator

public Iterator<Repository<Entity>> iterator()

hasRepository

public boolean hasRepository(String name)

hasRepository

public boolean hasRepository(EntityType entityType)

setEntityTypeFactory

@Autowired
public void setEntityTypeFactory(EntityTypeFactory entityTypeFactory)

setAttributeFactory

@Autowired
public void setAttributeFactory(AttributeFactory attrMetaFactory)