org.molgenis.data.annotation.core.resources.impl

Class MultiResourceConfigImpl

java.lang.Object

org.molgenis.data.annotation.core.resources.impl.MultiResourceConfigImpl

All Implemented Interfaces:

MultiResourceConfig

public class MultiResourceConfigImpl
extends Object
implements MultiResourceConfig

Created by charbonb on 15/06/15.

Field Summary

Fields

Modifier and Type	Field and Description
static String	DEFAULT_CHROMOSOMES
static String	DEFAULT_PATTERN
static String	DEFAULT_ROOT_DIRECTORY

Constructor Summary

Constructors

Constructor and Description
MultiResourceConfigImpl(String chromosomesProperty, String filePatternProperty, String folderProperty, Entity molgenisSettings)
MultiResourceConfigImpl(String chromosomesProperty, String filePatternProperty, String rootDirectoryProperty, String overrideChromosomeFilesProperty, Entity molgenisSettings) overrideChromosomeFiles contains the chromosome that do not comply with the pattern.

Method Summary

Modifier and Type	Method and Description
Map<String,ResourceConfig>	getConfigs()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

DEFAULT_CHROMOSOMES

public static final String DEFAULT_CHROMOSOMES

See Also:

Constant Field Values

DEFAULT_PATTERN

public static final String DEFAULT_PATTERN

See Also:

Constant Field Values

DEFAULT_ROOT_DIRECTORY

public static final String DEFAULT_ROOT_DIRECTORY

Constructor Detail

MultiResourceConfigImpl

public MultiResourceConfigImpl(String chromosomesProperty,
                               String filePatternProperty,
                               String rootDirectoryProperty,
                               String overrideChromosomeFilesProperty,
                               Entity molgenisSettings)

overrideChromosomeFiles contains the chromosome that do not comply with the pattern. those chromosomes and corresponding filenames should be stated comma separated per chromosome, and the chromosome and filename itself should be colon separated. e.g. 1:file1.vcf,2:file2.txt,X:XYZ.vcf

MultiResourceConfigImpl

public MultiResourceConfigImpl(String chromosomesProperty,
                               String filePatternProperty,
                               String folderProperty,
                               Entity molgenisSettings)

Method Detail

getConfigs

public Map<String,ResourceConfig> getConfigs()

Specified by:

getConfigs in interface MultiResourceConfig