org.molgenis.data.annotation.core.entity.impl.omim

Class OmimRepository

java.lang.Object

org.molgenis.data.support.AbstractRepository

org.molgenis.data.annotation.core.entity.impl.omim.OmimRepository

All Implemented Interfaces:

Closeable, AutoCloseable, Iterable<Entity>, Repository<Entity>

public class OmimRepository
extends AbstractRepository

Field Summary

Fields

Modifier and Type	Field and Description
static String	OMIM_AUTO_ID_COL_NAME
static String	OMIM_CYTO_LOCATION_COL_NAME
static String	OMIM_ENTRY_COL_NAME
static String	OMIM_GENE_SYMBOLS_COL_NAME
static String	OMIM_MIM_NUMBER_COL_NAME
static String	OMIM_PHENOTYPE_COL_NAME
static String	OMIM_TYPE_COL_NAME

Constructor Summary

Constructors

Constructor and Description
OmimRepository(File file, EntityTypeFactory entityTypeFactory, AttributeFactory attributeFactory)

Method Summary

Modifier and Type	Method and Description
long	count()
Stream<Entity>	findAll(Query<Entity> q)
Set<RepositoryCapability>	getCapabilities()
EntityType	getEntityType()
Iterator<Entity>	iterator()

Methods inherited from class org.molgenis.data.support.AbstractRepository

add, add, aggregate, close, count, delete, delete, deleteAll, deleteAll, deleteById, findAll, findAll, findOne, findOneById, findOneById, forEachBatched, getName, getQueryOperators, query, update, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.molgenis.data.Repository

forEachBatched, getExistingIDs, upsertBatch

Methods inherited from interface java.lang.Iterable

forEach, spliterator

Field Detail

OMIM_AUTO_ID_COL_NAME

public static final String OMIM_AUTO_ID_COL_NAME

See Also:

Constant Field Values

OMIM_PHENOTYPE_COL_NAME

public static final String OMIM_PHENOTYPE_COL_NAME

See Also:

Constant Field Values

OMIM_GENE_SYMBOLS_COL_NAME

public static final String OMIM_GENE_SYMBOLS_COL_NAME

See Also:

Constant Field Values

OMIM_MIM_NUMBER_COL_NAME

public static final String OMIM_MIM_NUMBER_COL_NAME

See Also:

Constant Field Values

OMIM_CYTO_LOCATION_COL_NAME

public static final String OMIM_CYTO_LOCATION_COL_NAME

See Also:

Constant Field Values

OMIM_ENTRY_COL_NAME

public static final String OMIM_ENTRY_COL_NAME

See Also:

Constant Field Values

OMIM_TYPE_COL_NAME

public static final String OMIM_TYPE_COL_NAME

See Also:

Constant Field Values

Constructor Detail

OmimRepository

public OmimRepository(File file,
                      EntityTypeFactory entityTypeFactory,
                      AttributeFactory attributeFactory)

Method Detail

getCapabilities

public Set<RepositoryCapability> getCapabilities()

getEntityType

public EntityType getEntityType()

iterator

public Iterator<Entity> iterator()

findAll

public Stream<Entity> findAll(Query<Entity> q)

Specified by:

findAll in interface Repository<Entity>

Overrides:

findAll in class AbstractRepository

count

public long count()

Specified by:

count in interface Repository<Entity>

Overrides:

count in class AbstractRepository