org.molgenis.data.annotation.core.entity.impl.omim

Class OmimAnnotator

java.lang.Object

org.molgenis.data.annotation.core.entity.impl.omim.OmimAnnotator

All Implemented Interfaces:

AnnotatorConfig

@Configuration
public class OmimAnnotator
extends Object
implements AnnotatorConfig

Field Summary

Fields

Modifier and Type	Field and Description
static String	NAME
static String	OMIM_CAUSAL_IDENTIFIER
static String	OMIM_CYTO_LOCATIONS
static String	OMIM_DISORDER
static String	OMIM_ENTRY
static String	OMIM_RESOURCE
static String	OMIM_TYPE
static char	SEPARATOR

Constructor Summary

Constructors

Constructor and Description
OmimAnnotator()

Method Summary

Modifier and Type	Method and Description
Attribute	getEntryAttr()
Attribute	getMimNumberAttr()
Attribute	getOmimLocationAttr()
Attribute	getPhenotypeAttr()
Attribute	getTypeAttr()
void	init()
RepositoryAnnotator	omim()
Resource	omimResource()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

NAME

public static final String NAME

See Also:

Constant Field Values

SEPARATOR

public static final char SEPARATOR

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Constant Field Values

OMIM_DISORDER

public static final String OMIM_DISORDER

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Constant Field Values

OMIM_CAUSAL_IDENTIFIER

public static final String OMIM_CAUSAL_IDENTIFIER

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Constant Field Values

OMIM_CYTO_LOCATIONS

public static final String OMIM_CYTO_LOCATIONS

See Also:

Constant Field Values

OMIM_ENTRY

public static final String OMIM_ENTRY

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Constant Field Values

OMIM_TYPE

public static final String OMIM_TYPE

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Constant Field Values

OMIM_RESOURCE

public static final String OMIM_RESOURCE

See Also:

Constant Field Values

Constructor Detail

OmimAnnotator

public OmimAnnotator()

Method Detail

getPhenotypeAttr

public Attribute getPhenotypeAttr()

getMimNumberAttr

public Attribute getMimNumberAttr()

getEntryAttr

public Attribute getEntryAttr()

getTypeAttr

public Attribute getTypeAttr()

getOmimLocationAttr

public Attribute getOmimLocationAttr()

omim

@Bean
public RepositoryAnnotator omim()

init

public void init()

Specified by:

init in interface AnnotatorConfig

omimResource

@Bean
public Resource omimResource()