org.molgenis.data.annotation.core.entity.impl.hpo

Class HPORepository

java.lang.Object

org.molgenis.data.support.AbstractRepository

org.molgenis.data.annotation.core.entity.impl.hpo.HPORepository

All Implemented Interfaces:

Closeable, AutoCloseable, Iterable<Entity>, Repository<Entity>

public class HPORepository
extends AbstractRepository

Field Summary

Fields

Modifier and Type	Field and Description
static String	HPO_DISEASE_ID_COL_NAME
static String	HPO_GENE_SYMBOL_COL_NAME
static String	HPO_ID_COL_NAME
static String	HPO_TERM_COL_NAME

Constructor Summary

Constructors

Constructor and Description
HPORepository(File file, EntityTypeFactory entityTypeFactory, AttributeFactory attributeFactory)

Method Summary

Modifier and Type	Method and Description
long	count()
Stream<Entity>	findAll(Query<Entity> q)
Set<RepositoryCapability>	getCapabilities()
EntityType	getEntityType()
Iterator<Entity>	iterator()

Methods inherited from class org.molgenis.data.support.AbstractRepository

add, add, aggregate, close, count, delete, delete, deleteAll, deleteAll, deleteById, findAll, findAll, findOne, findOneById, findOneById, forEachBatched, getName, getQueryOperators, query, update, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.molgenis.data.Repository

forEachBatched, getExistingIDs, upsertBatch

Methods inherited from interface java.lang.Iterable

forEach, spliterator

Field Detail

HPO_DISEASE_ID_COL_NAME

public static final String HPO_DISEASE_ID_COL_NAME

See Also:

Constant Field Values

HPO_GENE_SYMBOL_COL_NAME

public static final String HPO_GENE_SYMBOL_COL_NAME

See Also:

Constant Field Values

HPO_ID_COL_NAME

public static final String HPO_ID_COL_NAME

See Also:

Constant Field Values

HPO_TERM_COL_NAME

public static final String HPO_TERM_COL_NAME

See Also:

Constant Field Values

Constructor Detail

HPORepository

public HPORepository(File file,
                     EntityTypeFactory entityTypeFactory,
                     AttributeFactory attributeFactory)

Method Detail

getCapabilities

public Set<RepositoryCapability> getCapabilities()

getEntityType

public EntityType getEntityType()

iterator

public Iterator<Entity> iterator()

findAll

public Stream<Entity> findAll(Query<Entity> q)

Specified by:

findAll in interface Repository<Entity>

Overrides:

findAll in class AbstractRepository

count

public long count()

Specified by:

count in interface Repository<Entity>

Overrides:

count in class AbstractRepository