Uses of Class
org.molgenis.data.annotation.core.entity.impl.gavin.GavinThresholds

Packages that use GavinThresholds

Package	Description
org.molgenis.data.annotation.core.entity.impl.gavin

Uses of GavinThresholds in org.molgenis.data.annotation.core.entity.impl.gavin

Methods in org.molgenis.data.annotation.core.entity.impl.gavin that return GavinThresholds

Modifier and Type	Method and Description
static GavinThresholds	GavinThresholds.create(Double pathoMAFThreshold, Double meanPathogenicCADDScore, Double meanPopulationCADDScore, Double spec95thPerCADDThreshold, Double sens95thPerCADDThreshold, Category category)
static GavinThresholds	GavinThresholds.fromEntity(Entity annotationSourceEntity)
GavinThresholds	GavinThresholds.withExtraSensitivity(int extraSensitivityFactor)

Methods in org.molgenis.data.annotation.core.entity.impl.gavin with parameters of type GavinThresholds

Modifier and Type	Method and Description
Judgment	GavinAlgorithm.classifyVariant(Impact impact, Double caddScaled, Double exacMAF, String gene, GavinThresholds gavinThresholds) Classifies a variant using the given GavinThresholds.