org.molgenis.data.annotation.core.entity.impl.framework

Class RepositoryAnnotatorImpl

java.lang.Object

org.molgenis.data.annotation.core.AbstractRepositoryAnnotator

org.molgenis.data.annotation.core.AbstractRepositoryEntityAnnotator

org.molgenis.data.annotation.core.entity.impl.framework.RepositoryAnnotatorImpl

All Implemented Interfaces:

RepositoryAnnotator

Direct Known Subclasses:

EffectBasedAnnotator

public class RepositoryAnnotatorImpl
extends AbstractRepositoryEntityAnnotator

Field Summary

Fields inherited from interface org.molgenis.data.annotation.core.RepositoryAnnotator

ANNOTATOR_PREFIX

Constructor Summary

Constructors

Constructor and Description
RepositoryAnnotatorImpl(String name)

Method Summary

Modifier and Type	Method and Description
List<Entity>	annotateEntity(Entity entity, boolean updateMode)
boolean	annotationDataExists() Checks if folder and files that were set with a runtime property actually exist, or if a webservice can be reached
List<Attribute>	createAnnotatorAttributes(AttributeFactory attributeFactory)
CmdLineAnnotatorSettingsConfigurer	getCmdLineAnnotatorSettingsConfigurer()
AnnotatorInfo	getInfo()
List<Attribute>	getOutputAttributes() returns an EntityType containing the attributes the annotator will add
List<Attribute>	getRequiredAttributes() Returns a EntityType containing the attributes needed for the annotator to work
String	getSimpleName() Return the name of the annotator
void	init(EntityAnnotator entityAnnotator)

Methods inherited from class org.molgenis.data.annotation.core.AbstractRepositoryEntityAnnotator

annotate, annotate

Methods inherited from class org.molgenis.data.annotation.core.AbstractRepositoryAnnotator

annotate, canAnnotate, getDescription, getFullName

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RepositoryAnnotatorImpl

public RepositoryAnnotatorImpl(String name)

Method Detail

init

public void init(EntityAnnotator entityAnnotator)

getOutputAttributes

public List<Attribute> getOutputAttributes()

Description copied from interface: RepositoryAnnotator

returns an EntityType containing the attributes the annotator will add

Returns:

ouputMetadata

getRequiredAttributes

public List<Attribute> getRequiredAttributes()

Description copied from interface: RepositoryAnnotator

Returns a EntityType containing the attributes needed for the annotator to work

Returns:

inputMetaData;

getSimpleName

public String getSimpleName()

Description copied from interface: RepositoryAnnotator

Return the name of the annotator

Returns:

name

annotationDataExists

public boolean annotationDataExists()

Description copied from interface: RepositoryAnnotator

Checks if folder and files that were set with a runtime property actually exist, or if a webservice can be reached

Returns:

boolean

annotateEntity

public List<Entity> annotateEntity(Entity entity,
                                   boolean updateMode)
                            throws IOException,
                                   InterruptedException

Specified by:

annotateEntity in class AbstractRepositoryEntityAnnotator

Throws:

IOException

InterruptedException

getInfo

public AnnotatorInfo getInfo()

getCmdLineAnnotatorSettingsConfigurer

public CmdLineAnnotatorSettingsConfigurer getCmdLineAnnotatorSettingsConfigurer()

createAnnotatorAttributes

public List<Attribute> createAnnotatorAttributes(AttributeFactory attributeFactory)