org.molgenis.data.annotation.core.entity.impl

Class CGDAnnotator

java.lang.Object

org.molgenis.data.annotation.core.entity.impl.CGDAnnotator

All Implemented Interfaces:

AnnotatorConfig

@Configuration
public class CGDAnnotator
extends Object
implements AnnotatorConfig

Annotator that can add HGNC_ID and ENTREZ_GENE_ID and other attributes to an EntityType that has a attribute named 'GENE' that must be the HGNC gene dataType.

It reads this info from a tab separated CGD file. The location of this file is defined by a RuntimeProperty named 'cgd_location'

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	CGDAnnotator.CGDAttributeName
static class	CGDAnnotator.GeneralizedInheritance

Field Summary

Fields

Modifier and Type	Field and Description
static String	AGE_GROUP_LABEL
static String	CONDITION_LABEL
static String	GENERALIZED_INHERITANCE_LABEL
static String	INHERITANCE_LABEL
static String	NAME

Constructor Summary

Constructors

Constructor and Description
CGDAnnotator()

Method Summary

Modifier and Type	Method and Description
RepositoryAnnotator	cgd()
Resource	cgdResource()
void	init()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

NAME

public static final String NAME

See Also:

Constant Field Values

CONDITION_LABEL

public static final String CONDITION_LABEL

See Also:

Constant Field Values

AGE_GROUP_LABEL

public static final String AGE_GROUP_LABEL

See Also:

Constant Field Values

INHERITANCE_LABEL

public static final String INHERITANCE_LABEL

See Also:

Constant Field Values

GENERALIZED_INHERITANCE_LABEL

public static final String GENERALIZED_INHERITANCE_LABEL

See Also:

Constant Field Values

Constructor Detail

CGDAnnotator

public CGDAnnotator()

Method Detail

cgd

@Bean
public RepositoryAnnotator cgd()

init

public void init()

Specified by:

init in interface AnnotatorConfig

cgdResource

@Bean
public Resource cgdResource()