org.molgenis.data.annotation.core.effects

Class EffectsMetaData

java.lang.Object

org.molgenis.data.annotation.core.effects.EffectsMetaData

All Implemented Interfaces:

AnnotatorEntityType

@Component
public class EffectsMetaData
extends Object
implements AnnotatorEntityType

Field Summary

Fields

Modifier and Type	Field and Description
static String	ALT
static String	ANNOTATION
static String	C_DNA_POSITION
static String	CDS_POSITION
static String	DISTANCE_TO_FEATURE
static String	ERRORS
static String	FEATURE_ID
static String	FEATURE_TYPE
static String	GENE_ID
static String	GENE_NAME
static String	HGVS_C
static String	HGVS_P
static String	ID
static String	PROTEIN_POSITION
static String	PUTATIVE_IMPACT
static String	RANK_TOTAL
static String	TRANSCRIPT_BIOTYPE
static String	VARIANT

Constructor Summary

Constructors

Constructor and Description
EffectsMetaData()

Method Summary

Modifier and Type	Method and Description
Attribute	getAltAttr()
Attribute	getAnnotationAttr()
Attribute	getCdnaPositionAttr()
Attribute	getCdsPositionAttr()
Attribute	getDistanceToFeatureAttr()
Attribute	getErrorsAttr()
Attribute	getFeatureIdAttr()
Attribute	getFeatureTypeAttr()
Attribute	getGeneIdAttr()
Attribute	getGeneNameAttr()
Attribute	getHgvsCAttr()
Attribute	getHgvsPAttr()
LinkedList<Attribute>	getOrderedAttributes()
Attribute	getProteinPositionAttr()
Attribute	getPutativeImpactAttr()
Attribute	getRankTotalAttr()
Attribute	getTranscriptBiotypeAttr()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

ID

public static final String ID

See Also:

Constant Field Values

VARIANT

public static final String VARIANT

See Also:

Constant Field Values

ALT

public static final String ALT

See Also:

Constant Field Values

ANNOTATION

public static final String ANNOTATION

See Also:

Constant Field Values

PUTATIVE_IMPACT

public static final String PUTATIVE_IMPACT

See Also:

Constant Field Values

GENE_NAME

public static final String GENE_NAME

See Also:

Constant Field Values

GENE_ID

public static final String GENE_ID

See Also:

Constant Field Values

FEATURE_TYPE

public static final String FEATURE_TYPE

See Also:

Constant Field Values

FEATURE_ID

public static final String FEATURE_ID

See Also:

Constant Field Values

TRANSCRIPT_BIOTYPE

public static final String TRANSCRIPT_BIOTYPE

See Also:

Constant Field Values

RANK_TOTAL

public static final String RANK_TOTAL

See Also:

Constant Field Values

HGVS_C

public static final String HGVS_C

See Also:

Constant Field Values

HGVS_P

public static final String HGVS_P

See Also:

Constant Field Values

C_DNA_POSITION

public static final String C_DNA_POSITION

See Also:

Constant Field Values

CDS_POSITION

public static final String CDS_POSITION

See Also:

Constant Field Values

PROTEIN_POSITION

public static final String PROTEIN_POSITION

See Also:

Constant Field Values

DISTANCE_TO_FEATURE

public static final String DISTANCE_TO_FEATURE

See Also:

Constant Field Values

ERRORS

public static final String ERRORS

See Also:

Constant Field Values

Constructor Detail

EffectsMetaData

public EffectsMetaData()

Method Detail

getOrderedAttributes

public LinkedList<Attribute> getOrderedAttributes()

Specified by:

getOrderedAttributes in interface AnnotatorEntityType

getTranscriptBiotypeAttr

public Attribute getTranscriptBiotypeAttr()

getRankTotalAttr

public Attribute getRankTotalAttr()

getHgvsCAttr

public Attribute getHgvsCAttr()

getHgvsPAttr

public Attribute getHgvsPAttr()

getCdnaPositionAttr

public Attribute getCdnaPositionAttr()

getCdsPositionAttr

public Attribute getCdsPositionAttr()

getProteinPositionAttr

public Attribute getProteinPositionAttr()

getDistanceToFeatureAttr

public Attribute getDistanceToFeatureAttr()

getErrorsAttr

public Attribute getErrorsAttr()

getAnnotationAttr

public Attribute getAnnotationAttr()

getFeatureIdAttr

public Attribute getFeatureIdAttr()

getFeatureTypeAttr

public Attribute getFeatureTypeAttr()

getGeneIdAttr

public Attribute getGeneIdAttr()

getGeneNameAttr

public Attribute getGeneNameAttr()

getPutativeImpactAttr

public Attribute getPutativeImpactAttr()

getAltAttr

public Attribute getAltAttr()