org.molgenis.data.annotation.core

Class AbstractRepositoryEntityAnnotator

java.lang.Object

org.molgenis.data.annotation.core.AbstractRepositoryAnnotator

org.molgenis.data.annotation.core.AbstractRepositoryEntityAnnotator

All Implemented Interfaces:

RepositoryAnnotator

Direct Known Subclasses:

RepositoryAnnotatorImpl

public abstract class AbstractRepositoryEntityAnnotator
extends AbstractRepositoryAnnotator

Field Summary

Fields inherited from interface org.molgenis.data.annotation.core.RepositoryAnnotator

ANNOTATOR_PREFIX

Constructor Summary

Constructors

Constructor and Description
AbstractRepositoryEntityAnnotator()

Method Summary

Modifier and Type	Method and Description
Iterator<Entity>	annotate(Iterable<Entity> sourceIterable)
Iterator<Entity>	annotate(Iterable<Entity> sourceIterable, boolean updateMode)
abstract List<Entity>	annotateEntity(Entity entity, boolean updateMode)

Methods inherited from class org.molgenis.data.annotation.core.AbstractRepositoryAnnotator

annotate, canAnnotate, getDescription, getFullName

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.molgenis.data.annotation.core.RepositoryAnnotator

annotationDataExists, createAnnotatorAttributes, getCmdLineAnnotatorSettingsConfigurer, getInfo, getOutputAttributes, getRequiredAttributes, getSimpleName

Constructor Detail

AbstractRepositoryEntityAnnotator

public AbstractRepositoryEntityAnnotator()

Method Detail

annotate

public Iterator<Entity> annotate(Iterable<Entity> sourceIterable)

annotate

@Transactional
public Iterator<Entity> annotate(Iterable<Entity> sourceIterable,
                                                boolean updateMode)

annotateEntity

public abstract List<Entity> annotateEntity(Entity entity,
                                            boolean updateMode)
                                     throws IOException,
                                            InterruptedException

Throws:

IOException

InterruptedException