org.molgenis.data.annotation.core

Class AbstractRepositoryAnnotator

java.lang.Object

org.molgenis.data.annotation.core.AbstractRepositoryAnnotator

All Implemented Interfaces:

RepositoryAnnotator

Direct Known Subclasses:

AbstractRepositoryEntityAnnotator, SnpEffRepositoryAnnotator

public abstract class AbstractRepositoryAnnotator
extends Object
implements RepositoryAnnotator

Field Summary

Fields inherited from interface org.molgenis.data.annotation.core.RepositoryAnnotator

ANNOTATOR_PREFIX

Constructor Summary

Constructors

Constructor and Description
AbstractRepositoryAnnotator()

Method Summary

Modifier and Type	Method and Description
Iterator<Entity>	annotate(Iterator<Entity> sourceIterable)
String	canAnnotate(EntityType repoMetaData) Returns null if the annotator will work for the given metadata, a reason if not so
String	getDescription()
String	getFullName()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.molgenis.data.annotation.core.RepositoryAnnotator

annotate, annotate, annotationDataExists, createAnnotatorAttributes, getCmdLineAnnotatorSettingsConfigurer, getInfo, getOutputAttributes, getRequiredAttributes, getSimpleName

Constructor Detail

AbstractRepositoryAnnotator

public AbstractRepositoryAnnotator()

Method Detail

canAnnotate

public String canAnnotate(EntityType repoMetaData)

Description copied from interface: RepositoryAnnotator

Returns null if the annotator will work for the given metadata, a reason if not so

Specified by:

canAnnotate in interface RepositoryAnnotator

Returns:

canAnnotate

annotate

public Iterator<Entity> annotate(Iterator<Entity> sourceIterable)

Specified by:

annotate in interface RepositoryAnnotator

getFullName

public String getFullName()

Specified by:

getFullName in interface RepositoryAnnotator

getDescription

public String getDescription()

Specified by:

getDescription in interface RepositoryAnnotator