org.molgenis.data.annotation.provider

Class ClinvarDataProvider

java.lang.Object

org.molgenis.data.annotation.provider.ClinvarDataProvider

@Component
public class ClinvarDataProvider
extends Object

Field Summary

Fields

Modifier and Type	Field and Description
static String	CLINVAR_FILE_LOCATION_PROPERTY

Constructor Summary

Constructors

Constructor and Description
ClinvarDataProvider(MolgenisSettings molgenisSettings)

Method Summary

Modifier and Type	Method and Description
List<String>	getChromosomePositionReferenceAlternativeInformationFromClinvarLine(String[] clinvarLine)
Map<List<String>,ClinvarData>	getClinvarData()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

CLINVAR_FILE_LOCATION_PROPERTY

public static final String CLINVAR_FILE_LOCATION_PROPERTY

See Also:

Constant Field Values

Constructor Detail

ClinvarDataProvider

@Autowired
public ClinvarDataProvider(MolgenisSettings molgenisSettings)

Method Detail

getClinvarData

public Map<List<String>,ClinvarData> getClinvarData()
                                             throws IOException

Throws:

IOException

getChromosomePositionReferenceAlternativeInformationFromClinvarLine

public List<String> getChromosomePositionReferenceAlternativeInformationFromClinvarLine(String[] clinvarLine)