org.molgenis.data.annotation.impl

Class HgncSymbolServiceAnnotator

java.lang.Object

org.molgenis.data.annotation.AbstractRepositoryAnnotator

org.molgenis.data.annotation.LocusAnnotator

org.molgenis.data.annotation.impl.HgncSymbolServiceAnnotator

All Implemented Interfaces:

EventListener, RepositoryAnnotator, org.springframework.context.ApplicationListener<org.springframework.context.event.ContextRefreshedEvent>

@Component(value="hgncSymbolService")
public class HgncSymbolServiceAnnotator
extends LocusAnnotator

Field Summary

Fields inherited from class org.molgenis.data.annotation.LocusAnnotator

CHROMOSOME, POSITION

Fields inherited from interface org.molgenis.data.annotation.RepositoryAnnotator

ANNOTATOR_PREFIX

Constructor Summary

Constructors

Constructor and Description
HgncSymbolServiceAnnotator(AnnotationService annotatorService, HgncLocationsProvider hgncLocationsProvider)

Method Summary

Modifier and Type	Method and Description
List<Entity>	annotateEntity(Entity entity)
protected boolean	annotationDataExists() Checks if folder and files that were set with a runtime property actually exist, or if a webservice can be reached
String	getDescription()
EntityMetaData	getOutputMetaData()
String	getSimpleName()

Methods inherited from class org.molgenis.data.annotation.LocusAnnotator

getInputMetaData

Methods inherited from class org.molgenis.data.annotation.AbstractRepositoryAnnotator

annotate, canAnnotate, getFullName, onApplicationEvent

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.molgenis.data.annotation.RepositoryAnnotator

annotate, canAnnotate, getFullName

Methods inherited from interface org.springframework.context.ApplicationListener

onApplicationEvent

Constructor Detail

HgncSymbolServiceAnnotator

@Autowired
public HgncSymbolServiceAnnotator(AnnotationService annotatorService,
                                             HgncLocationsProvider hgncLocationsProvider)

Method Detail

getSimpleName

public String getSimpleName()

annotationDataExists

protected boolean annotationDataExists()

Description copied from class: AbstractRepositoryAnnotator

Checks if folder and files that were set with a runtime property actually exist, or if a webservice can be reached

Specified by:

annotationDataExists in class AbstractRepositoryAnnotator

Returns:

boolean

annotateEntity

public List<Entity> annotateEntity(Entity entity)
                            throws IOException,
                                   InterruptedException

Specified by:

annotateEntity in class AbstractRepositoryAnnotator

Throws:

IOException

InterruptedException

getOutputMetaData

public EntityMetaData getOutputMetaData()

getDescription

public String getDescription()