Uses of Class
org.molgenis.data.annotation.AbstractRepositoryAnnotator

Packages that use AbstractRepositoryAnnotator

Package	Description
org.molgenis.data.annotation
org.molgenis.data.annotation.impl

Uses of AbstractRepositoryAnnotator in org.molgenis.data.annotation

Subclasses of AbstractRepositoryAnnotator in org.molgenis.data.annotation

Modifier and Type	Class and Description
class	LocusAnnotator Created by jvelde on 2/13/14.
class	VariantAnnotator

Uses of AbstractRepositoryAnnotator in org.molgenis.data.annotation.impl

Subclasses of AbstractRepositoryAnnotator in org.molgenis.data.annotation.impl

Modifier and Type	Class and Description
class	CaddServiceAnnotator This class performs a system call to cross reference a chromosome and genomic location with a tabix indexed file.
class	ClinicalGenomicsDatabaseServiceAnnotator
class	ClinVarServiceAnnotator
class	CosmicServiceAnnotator This class calls the Ensembl webservice with a ensemble ID.
class	DbnsfpGeneServiceAnnotator This class uses a location to retrieve a gene from the ...
class	DbnsfpVariantServiceAnnotator This class uses a chromosome to approach a dbNSFP chromosome variant file, it then checks all locations recorded for a chromosome in the data set, for every line, and uses a matching line to add annotation to the data set variant.
class	EbiServiceAnnotator This class calls the EBI CHeMBL webservice with a uniprot ID.
class	ExACServiceAnnotator ExAC annotator Data @ ftp://ftp.broadinstitute.org/pub/ExAC_release/release0.3/ TODO: feature enhancement: match multiple alternatives from SOURCE file to multiple alternatives in ExAC e.g.
class	GoNLServiceAnnotator GoNl annotator data: https://molgenis26.target.rug.nl/downloads/gonl_public/variants/release5_with_GTC/ release5_noContam_noChildren_with_AN_AC_GTC_stripped.tgz PLUS chrX from http://molgenis15.target.rug.nl/release4_noContam_noChildren_with_AN_AC_GTC_stripped.tgz GoNL example line: 1 126108 rs146756510 G A .
class	HgncSymbolServiceAnnotator
class	KeggServiceAnnotator
class	OmimHpoAnnotator Created by jvelde on 2/12/14.
class	ThousandGenomesServiceAnnotator 1000G annotator Data @ http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/ TODO: feature enhancement: match multiple alternatives from SOURCE file to multiple alternatives in 1000G e.g.