org.molgenis.data.annotation

Class VariantAnnotator

java.lang.Object

org.molgenis.data.annotation.AbstractRepositoryAnnotator

org.molgenis.data.annotation.LocusAnnotator

org.molgenis.data.annotation.VariantAnnotator

All Implemented Interfaces:

EventListener, RepositoryAnnotator, org.springframework.context.ApplicationListener<org.springframework.context.event.ContextRefreshedEvent>

Direct Known Subclasses:

CaddServiceAnnotator, ClinVarServiceAnnotator, DbnsfpVariantServiceAnnotator, ExACServiceAnnotator, GoNLServiceAnnotator, ThousandGenomesServiceAnnotator

public abstract class VariantAnnotator
extends LocusAnnotator

Field Summary

Fields

Modifier and Type	Field and Description
static String	ALTERNATIVE
static String	REFERENCE

Fields inherited from class org.molgenis.data.annotation.LocusAnnotator

CHROMOSOME, POSITION

Fields inherited from interface org.molgenis.data.annotation.RepositoryAnnotator

ANNOTATOR_PREFIX

Constructor Summary

Constructors

Constructor and Description
VariantAnnotator()

Method Summary

Modifier and Type	Method and Description
EntityMetaData	getInputMetaData()

Methods inherited from class org.molgenis.data.annotation.AbstractRepositoryAnnotator

annotate, annotateEntity, annotationDataExists, canAnnotate, getFullName, onApplicationEvent

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.molgenis.data.annotation.RepositoryAnnotator

annotate, canAnnotate, getDescription, getFullName, getOutputMetaData, getSimpleName

Methods inherited from interface org.springframework.context.ApplicationListener

onApplicationEvent

Field Detail

REFERENCE

public static final String REFERENCE

See Also:

Constant Field Values

ALTERNATIVE

public static final String ALTERNATIVE

See Also:

Constant Field Values

Constructor Detail

VariantAnnotator

public VariantAnnotator()

Method Detail

getInputMetaData

public EntityMetaData getInputMetaData()

Specified by:

getInputMetaData in interface RepositoryAnnotator

Overrides:

getInputMetaData in class LocusAnnotator