org.molgenis.data.annotation

Class LocusAnnotator

java.lang.Object

org.molgenis.data.annotation.AbstractRepositoryAnnotator

org.molgenis.data.annotation.LocusAnnotator

All Implemented Interfaces:

EventListener, RepositoryAnnotator, org.springframework.context.ApplicationListener<org.springframework.context.event.ContextRefreshedEvent>

Direct Known Subclasses:

ClinicalGenomicsDatabaseServiceAnnotator, DbnsfpGeneServiceAnnotator, HgncSymbolServiceAnnotator, KeggServiceAnnotator, OmimHpoAnnotator, VariantAnnotator

public abstract class LocusAnnotator
extends AbstractRepositoryAnnotator
implements RepositoryAnnotator, org.springframework.context.ApplicationListener<org.springframework.context.event.ContextRefreshedEvent>

Created by jvelde on 2/13/14.

Field Summary

Fields

Modifier and Type	Field and Description
static String	CHROMOSOME
static String	POSITION

Fields inherited from interface org.molgenis.data.annotation.RepositoryAnnotator

ANNOTATOR_PREFIX

Constructor Summary

Constructors

Constructor and Description
LocusAnnotator()

Method Summary

Modifier and Type	Method and Description
EntityMetaData	getInputMetaData()

Methods inherited from class org.molgenis.data.annotation.AbstractRepositoryAnnotator

annotate, annotateEntity, annotationDataExists, canAnnotate, getFullName, onApplicationEvent

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.molgenis.data.annotation.RepositoryAnnotator

annotate, canAnnotate, getDescription, getFullName, getOutputMetaData, getSimpleName

Methods inherited from interface org.springframework.context.ApplicationListener

onApplicationEvent

Field Detail

CHROMOSOME

public static final String CHROMOSOME

See Also:

Constant Field Values

POSITION

public static final String POSITION

See Also:

Constant Field Values

Constructor Detail

LocusAnnotator

public LocusAnnotator()

Method Detail

getInputMetaData

public EntityMetaData getInputMetaData()

Specified by:

getInputMetaData in interface RepositoryAnnotator