org.molgenis.data.annotation

Class AbstractRepositoryAnnotator

java.lang.Object

org.molgenis.data.annotation.AbstractRepositoryAnnotator

All Implemented Interfaces:

EventListener, RepositoryAnnotator, org.springframework.context.ApplicationListener<org.springframework.context.event.ContextRefreshedEvent>

Direct Known Subclasses:

CosmicServiceAnnotator, EbiServiceAnnotator, LocusAnnotator

public abstract class AbstractRepositoryAnnotator
extends Object
implements RepositoryAnnotator, org.springframework.context.ApplicationListener<org.springframework.context.event.ContextRefreshedEvent>

Created with IntelliJ IDEA. User: charbonb Date: 21/02/14 Time: 11:24 To change this template use File | Settings | File Templates.

Field Summary

Fields inherited from interface org.molgenis.data.annotation.RepositoryAnnotator

ANNOTATOR_PREFIX

Constructor Summary

Constructors

Constructor and Description
AbstractRepositoryAnnotator()

Method Summary

Modifier and Type	Method and Description
Iterator<Entity>	annotate(Iterable<Entity> sourceIterable)
abstract List<Entity>	annotateEntity(Entity entity)
protected abstract boolean	annotationDataExists() Checks if folder and files that were set with a runtime property actually exist, or if a webservice can be reached
String	canAnnotate(EntityMetaData repoMetaData)
String	getFullName()
void	onApplicationEvent(org.springframework.context.event.ContextRefreshedEvent event)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.molgenis.data.annotation.RepositoryAnnotator

getDescription, getInputMetaData, getOutputMetaData, getSimpleName

Constructor Detail

AbstractRepositoryAnnotator

public AbstractRepositoryAnnotator()

Method Detail

onApplicationEvent

public void onApplicationEvent(org.springframework.context.event.ContextRefreshedEvent event)

Specified by:

onApplicationEvent in interface org.springframework.context.ApplicationListener<org.springframework.context.event.ContextRefreshedEvent>

canAnnotate

public String canAnnotate(EntityMetaData repoMetaData)

Specified by:

canAnnotate in interface RepositoryAnnotator

annotationDataExists

protected abstract boolean annotationDataExists()

Checks if folder and files that were set with a runtime property actually exist, or if a webservice can be reached

Returns:

boolean

annotate

@Transactional
public Iterator<Entity> annotate(Iterable<Entity> sourceIterable)

Specified by:

annotate in interface RepositoryAnnotator

annotateEntity

public abstract List<Entity> annotateEntity(Entity entity)
                                     throws IOException,
                                            InterruptedException

Throws:

IOException

InterruptedException

getFullName

public String getFullName()

Specified by:

getFullName in interface RepositoryAnnotator