Package org.uniprot.uniprot

Class ProteinType

java.lang.Object
org.uniprot.uniprot.ProteinType
public class ProteinType extends Object
Describes the names for the protein and parts thereof. Equivalent to the flat file DE-line.

Java class for proteinType complex type

.

The following schema fragment specifies the expected content contained within this class.


 <complexType name="proteinType">
   <complexContent>
     <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
       <sequence>
         <group ref="{https://uniprot.org/uniprot}proteinNameGroup"/>
         <element name="domain" maxOccurs="unbounded" minOccurs="0">
           <complexType>
             <complexContent>
               <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
                 <group ref="{https://uniprot.org/uniprot}proteinNameGroup"/>
               </restriction>
             </complexContent>
           </complexType>
         </element>
         <element name="component" maxOccurs="unbounded" minOccurs="0">
           <complexType>
             <complexContent>
               <restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
                 <group ref="{https://uniprot.org/uniprot}proteinNameGroup"/>
               </restriction>
             </complexContent>
           </complexType>
         </element>
       </sequence>
     </restriction>
   </complexContent>
 </complexType>

  • Field Details

  • Constructor Details

    • ProteinType

      public ProteinType()

  • Method Details

    • getRecommendedName

      public ProteinType.RecommendedName getRecommendedName()
      Gets the value of the recommendedName property.
      Returns:
      possible object is ProteinType.RecommendedName

    • setRecommendedName

      public void setRecommendedName(ProteinType.RecommendedName value)
      Sets the value of the recommendedName property.
      Parameters:
      value - allowed object is ProteinType.RecommendedName

    • getAlternativeName

      public List<ProteinType.AlternativeName> getAlternativeName()
      Gets the value of the alternativeName property.

      This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the alternativeName property.

      For example, to add a new item, do as follows: 

       getAlternativeName().add(newItem);

      Objects of the following type(s) are allowed in the list ProteinType.AlternativeName

      Returns:
      The value of the alternativeName property.

    • getSubmittedName

      public List<ProteinType.SubmittedName> getSubmittedName()
      Gets the value of the submittedName property.

      This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the submittedName property.

      For example, to add a new item, do as follows: 

       getSubmittedName().add(newItem);

      Objects of the following type(s) are allowed in the list ProteinType.SubmittedName

      Returns:
      The value of the submittedName property.

    • getAllergenName

      public EvidencedStringType getAllergenName()
      Gets the value of the allergenName property.
      Returns:
      possible object is EvidencedStringType

    • setAllergenName

      public void setAllergenName(EvidencedStringType value)
      Sets the value of the allergenName property.
      Parameters:
      value - allowed object is EvidencedStringType

    • getBiotechName

      public EvidencedStringType getBiotechName()
      Gets the value of the biotechName property.
      Returns:
      possible object is EvidencedStringType

    • setBiotechName

      public void setBiotechName(EvidencedStringType value)
      Sets the value of the biotechName property.
      Parameters:
      value - allowed object is EvidencedStringType

    • getCdAntigenName

      public List<EvidencedStringType> getCdAntigenName()
      Gets the value of the cdAntigenName property.

      This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the cdAntigenName property.

      For example, to add a new item, do as follows: 

       getCdAntigenName().add(newItem);

      Objects of the following type(s) are allowed in the list EvidencedStringType

      Returns:
      The value of the cdAntigenName property.

    • getInnName

      public List<EvidencedStringType> getInnName()
      Gets the value of the innName property.

      This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the innName property.

      For example, to add a new item, do as follows: 

       getInnName().add(newItem);

      Objects of the following type(s) are allowed in the list EvidencedStringType

      Returns:
      The value of the innName property.

    • getDomain

      public List<ProteinType.Domain> getDomain()
      Describes names of "domains". Equivalent to the flat file DE-line Includes: section. Gets the value of the domain property.

      This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the domain property.

      For example, to add a new item, do as follows: 

       getDomain().add(newItem);

      Objects of the following type(s) are allowed in the list ProteinType.Domain

      Returns:
      The value of the domain property.

    • getComponent

      public List<ProteinType.Component> getComponent()
      Describes names of processed products. Equivalent to the flat file DE-line Contains: section. Gets the value of the component property.

      This accessor method returns a reference to the live list, not a snapshot. Therefore any modification you make to the returned list will be present inside the JAXB object. This is why there is not a set method for the component property.

      For example, to add a new item, do as follows: 

       getComponent().add(newItem);

      Objects of the following type(s) are allowed in the list ProteinType.Component

      Returns:
      The value of the component property.