Package org.dishevelled.bio.protein.uniprot

Class UniprotEntrySequenceReader

java.lang.Object

org.dishevelled.bio.protein.uniprot.UniprotEntrySequenceReader

@Immutable
public final class UniprotEntrySequenceReader
extends Object

Streaming UniProt XML reader that extracts entry sequences.

Since:

2.5

Author:

Michael Heuer

Method Summary

Modifier and Type	Method	Description
static void	stream(Reader reader, EntrySequenceListener callback)	Stream UniProt XML from the specified reader and extract entry sequences.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details

stream

public static void stream(Reader reader,
 EntrySequenceListener callback)
                   throws IOException

Stream UniProt XML from the specified reader and extract entry sequences.

Parameters:

reader - UniProt XML reader to read from, must not be null

callback - entry sequence callback, must not be null

Throws:

IOException - if an I/O error occurs