Package org.dishevelled.bio.protein.uniprot

Class EntrySequence

java.lang.Object

org.dishevelled.bio.protein.uniprot.EntrySequence

public final class EntrySequence
extends Object

Entry sequence.

Since:

2.5

Author:

Michael Heuer

Constructor Summary

Constructors

Constructor	Description
EntrySequence(int length, int mass, String checksum, String modified, int version, boolean precursor, String fragment, String sequence)	Create a new entry sequence.

Method Summary

Modifier and Type	Method	Description
String	getAccession()	Return the accession for this entry sequence.
String	getChecksum()	Return the checksum for this entry sequence.
String	getFragment()	Return the fragment for this entry sequence, may be null.
int	getLength()	Return the length for this entry sequence.
int	getMass()	Return the mass for this entry sequence.
String	getModified()	Return the last modified date for this entry sequence.
String	getSequence()	Return the sequence for this entry sequence.
int	getVersion()	Return the version for this entry sequence.
boolean	isPrecursor()	Return true if this entry sequence is a precursor.
(package private) EntrySequence	withAccession(String accession)	Return this entry sequence with the specified accession.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

EntrySequence

EntrySequence(int length,
 int mass,
 String checksum,
 String modified,
 int version,
 boolean precursor,
 @Nullable
 String fragment,
 String sequence)

Create a new entry sequence.

Parameters:

length - length

mass - mass

checksum - checksum, must not be null

modified - modified, must not be null

version - version

precursor - precursor

fragment - fragment, if any

sequence - sequence, must not be null

Method Details

getAccession

public String getAccession()

Return the accession for this entry sequence.

Returns:

the accession for this entry sequence

getLength

public int getLength()

Return the length for this entry sequence.

Returns:

the length for this entry sequence

getMass

public int getMass()

Return the mass for this entry sequence.

Returns:

the mass for this entry sequence

getChecksum

public String getChecksum()

Return the checksum for this entry sequence.

Returns:

the checksum for this entry sequence

getModified

public String getModified()

Return the last modified date for this entry sequence.

Returns:

the last modified date for this entry sequence

getVersion

public int getVersion()

Return the version for this entry sequence.

Returns:

the version for this entry sequence

isPrecursor

public boolean isPrecursor()

Return true if this entry sequence is a precursor.

Returns:

true if this entry sequence is a precursor

getFragment

public String getFragment()

Return the fragment for this entry sequence, may be null.

Returns:

the fragment for this entry sequence, may be null

getSequence

public String getSequence()

Return the sequence for this entry sequence.

Returns:

the sequence for this entry sequence

withAccession

EntrySequence withAccession(String accession)

Return this entry sequence with the specified accession.

Parameters:

accession - accession, must not be null

Returns:

this entry sequence with the specified accession