Package org.dishevelled.bio.protein.uniprot

Class EntryFeature

java.lang.Object

org.dishevelled.bio.protein.uniprot.EntryFeature

public final class EntryFeature
extends Object

Entry feature.

Since:

2.5

Author:

Michael Heuer

Constructor Summary

Constructors

Constructor	Description
EntryFeature(String id, String description, String evidence, String ref, String type, String original, String variations, Location location, String ligand, String ligandPart)	Create a new entry feature.

Method Summary

Modifier and Type	Method	Description
String	getAccession()	Return the accession for this entry feature.
String	getDescription()	Return the description for this entry feature, may be null.
String	getEvidence()	Return the evidence for this entry feature, may be null.
String	getId()	Return the id for this entry feature, may be null.
String	getLigand()	Return the ligand for this entry feature, may be null.
String	getLigandPart()	Return the ligand part for this entry feature, may be null.
Location	getLocation()	Return the location for this entry feature.
String	getOriginal()	Return the original sequence for this entry feature, may be null.
String	getRef()	Return the ref for this entry feature, may be null.
String	getType()	Return the type for this entry feature.
String	getVariations()	Return the sequence variations for this entry feature, may be null.
(package private) EntryFeature	withAccession(String accession)	Return this entry feature with the specified accession.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

EntryFeature

EntryFeature(@Nullable
 String id,
 @Nullable
 String description,
 @Nullable
 String evidence,
 @Nullable
 String ref,
 String type,
 @Nullable
 String original,
 @Nullable
 String variations,
 Location location,
 @Nullable
 String ligand,
 @Nullable
 String ligandPart)

Create a new entry feature.

Parameters:

id - id, if any

description - description, if any

evidence - evidence, if any

ref - ref, if any

type - type, must not be null

original - original, if any

variations - variations, if any

location - location, must not be null

ligand - ligand, if any

ligandPart - ligand part, if any

Method Details

getAccession

public String getAccession()

Return the accession for this entry feature.

Returns:

the accession for this entry feature

getId

public String getId()

Return the id for this entry feature, may be null.

Returns:

the id for this entry feature, may be null

getDescription

public String getDescription()

Return the description for this entry feature, may be null.

Returns:

the description for this entry feature, may be null

getEvidence

public String getEvidence()

Return the evidence for this entry feature, may be null.

Returns:

the evidence for this entry feature, may be null

getRef

public String getRef()

Return the ref for this entry feature, may be null.

Returns:

the ref for this entry feature, may be null

getType

public String getType()

Return the type for this entry feature.

Returns:

the type for this entry feature

getOriginal

public String getOriginal()

Return the original sequence for this entry feature, may be null.

Returns:

the original sequence for this entry feature, may be null

getVariations

public String getVariations()

Return the sequence variations for this entry feature, may be null.

Returns:

the sequence variations for this entry feature, may be null

getLocation

public Location getLocation()

Return the location for this entry feature.

Returns:

the location for this entry feature

getLigand

public String getLigand()

Return the ligand for this entry feature, may be null.

Returns:

the ligand for this entry feature, may be null

getLigandPart

public String getLigandPart()

Return the ligand part for this entry feature, may be null.

Returns:

the ligand part for this entry feature, may be null

withAccession

EntryFeature withAccession(String accession)

Return this entry feature with the specified accession.

Parameters:

accession - accession, must not be null

Returns:

this entry feature with the specified accession