org.dishevelled.bio.feature.bed

Enum BedFormat

java.lang.Object

java.lang.Enum<BedFormat>

org.dishevelled.bio.feature.bed.BedFormat

All Implemented Interfaces:

Serializable, Comparable<BedFormat>

public enum BedFormat
extends Enum<BedFormat>

BED formats.

Author:

Michael Heuer

Enum Constant Summary

Enum Constants

Enum Constant and Description
BED12 BED12 format, chrom start end name score strand thickStart thickEnd itemRgb blockCount blockSizes blockStarts.
BED3 BED3 format, chrom start end.
BED4 BED4 format, chrom start end name.
BED5 BED5 format, chrom start end name score.
BED6 BED6 format, chrom start end name score strand.

Method Summary

Modifier and Type	Method and Description
boolean	isAtLeastBED12() Return true if this BED format is at least BED12.
boolean	isAtLeastBED3() Return true if this BED format is at least BED3.
boolean	isAtLeastBED4() Return true if this BED format is at least BED4.
boolean	isAtLeastBED5() Return true if this BED format is at least BED5.
boolean	isAtLeastBED6() Return true if this BED format is at least BED6.
boolean	isBED12() Return true if this BED format is BED12.
boolean	isBED3() Return true if this BED format is BED3.
boolean	isBED4() Return true if this BED format is BED4.
boolean	isBED5() Return true if this BED format is BED5.
boolean	isBED6() Return true if this BED format is BED6.
static BedFormat	valueOf(String name) Returns the enum constant of this type with the specified name.
static BedFormat[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

BED3

public static final BedFormat BED3

BED3 format, chrom start end.

BED4

public static final BedFormat BED4

BED4 format, chrom start end name.

BED5

public static final BedFormat BED5

BED5 format, chrom start end name score.

BED6

public static final BedFormat BED6

BED6 format, chrom start end name score strand.

BED12

public static final BedFormat BED12

BED12 format, chrom start end name score strand thickStart thickEnd itemRgb blockCount blockSizes blockStarts.

Method Detail

values

public static BedFormat[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (BedFormat c : BedFormat.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static BedFormat valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null

isBED3

public boolean isBED3()

Return true if this BED format is BED3.

Returns:

true if this BED format is BED3

isAtLeastBED3

public boolean isAtLeastBED3()

Return true if this BED format is at least BED3.

Returns:

true if this BED format is at least BED3

isBED4

public boolean isBED4()

Return true if this BED format is BED4.

Returns:

true if this BED format is BED4

isAtLeastBED4

public boolean isAtLeastBED4()

Return true if this BED format is at least BED4.

Returns:

true if this BED format is at least BED4

isBED5

public boolean isBED5()

Return true if this BED format is BED5.

Returns:

true if this BED format is BED5

isAtLeastBED5

public boolean isAtLeastBED5()

Return true if this BED format is at least BED5.

Returns:

true if this BED format is at least BED5

isBED6

public boolean isBED6()

Return true if this BED format is BED6.

Returns:

true if this BED format is BED6

isAtLeastBED6

public boolean isAtLeastBED6()

Return true if this BED format is at least BED6.

Returns:

true if this BED format is at least BED6

isBED12

public boolean isBED12()

Return true if this BED format is BED12.

Returns:

true if this BED format is BED12

isAtLeastBED12

public boolean isAtLeastBED12()

Return true if this BED format is at least BED12.

Returns:

true if this BED format is at least BED12