Serialized Form

Package org.biojava.nbio.ontology

Class org.biojava.nbio.ontology.AlreadyExistsException extends OntologyException implements Serializable

serialVersionUID:

1L

Class org.biojava.nbio.ontology.DefaultOps extends Object implements Serializable

serialVersionUID:

1L

Class org.biojava.nbio.ontology.InvalidTermException extends OntologyException implements Serializable

serialVersionUID:

1L

Class org.biojava.nbio.ontology.Ontology.Impl extends Object implements Serializable

serialVersionUID:

-8064461497813727957L

Serialized Fields

description

String description

localRemoteTerms

Set<Term> localRemoteTerms

name

String name

objectTriples

Map<Term,Set<Triple>> objectTriples

ops

OntologyOps ops

relationTriples

Map<Term,Set<Triple>> relationTriples

remoteTerms

Map<Term,RemoteTerm> remoteTerms

subjectTriples

Map<Term,Set<Triple>> subjectTriples

terms

Map<String,Term> terms

triples

Set<Triple> triples

Class org.biojava.nbio.ontology.OntologyException extends Exception implements Serializable

serialVersionUID:

1L

Class org.biojava.nbio.ontology.OntologyTerm.Impl extends Object implements Serializable

serialVersionUID:

1L

Serialized Fields

ontology

Ontology ontology

synonyms

Set synonyms

target

Ontology target

Class org.biojava.nbio.ontology.RemoteTerm.Impl extends AbstractTerm implements Serializable

serialVersionUID:

922700041939183676L

Serialized Fields

name

String name

ontology

Ontology ontology

remoteTerm

Term remoteTerm

synonyms

Set synonyms

Class org.biojava.nbio.ontology.Term.Impl extends AbstractTerm implements Serializable

serialVersionUID:

6561668917514377417L

Serialized Fields

annotation

Annotation annotation

name

String name

ontology

Ontology ontology

synonyms

Set<Object> synonyms

Class org.biojava.nbio.ontology.Triple.Impl extends Object implements Serializable

serialVersionUID:

3807331980372839221L

Serialized Fields

description

String description

name

String name

object

Term object

predicate

Term predicate

subject

Term subject

synonyms

Set<Object> synonyms

Class org.biojava.nbio.ontology.Variable.Impl extends Term.Impl implements Serializable

serialVersionUID:

1L

Package org.biojava.nbio.ontology.utils

Class org.biojava.nbio.ontology.utils.AbstractAnnotation extends Object implements Serializable

serialVersionUID:

2753449055959952873L

Class org.biojava.nbio.ontology.utils.AssertionFailure extends AssertionError implements Serializable

Class org.biojava.nbio.ontology.utils.SmallAnnotation extends AbstractAnnotation implements Serializable

Serialized Fields

properties

Map properties

Class org.biojava.nbio.ontology.utils.SmallMap extends AbstractMap implements Serializable

Serialized Fields

mappings

Object[] mappings

numMappings

int numMappings

Class org.biojava.nbio.ontology.utils.StaticMemberPlaceHolder extends Object implements Serializable

Serialization Methods

readResolve

public Object readResolve()
                   throws ObjectStreamException

Throws:

ObjectStreamException

Serialized Fields

className

String className

fieldName

String fieldName