org.apache.ctakes.relationextractor.data

Class GoldAnnotationStatsCalculator

java.lang.Object

org.apache.uima.analysis_component.AnalysisComponent_ImplBase

org.apache.uima.analysis_component.Annotator_ImplBase

org.apache.uima.analysis_component.JCasAnnotator_ImplBase

org.apache.uima.fit.component.JCasAnnotator_ImplBase

org.apache.ctakes.relationextractor.data.GoldAnnotationStatsCalculator

All Implemented Interfaces:

org.apache.uima.analysis_component.AnalysisComponent

@PipeBitInfo(name="Gold Stats Calculator",
             description="Count various stats such as token and relation counts based on the gold standard data.",
             role=SPECIAL,
             dependencies={SENTENCE,BASE_TOKEN,IDENTIFIED_ANNOTATION,GENERIC_RELATION,LOCATION_RELATION,DEGREE_RELATION})
public class GoldAnnotationStatsCalculator
extends org.apache.uima.fit.component.JCasAnnotator_ImplBase

Count various stats such as token and relation counts based on the gold standard data. Make sure relationType constant is set to the appropriate relation ("location_of" vs. "degree_of") to make sure the relation-specific statisitics are calculated correctly.

Author:

dmitriy dligach

Field Summary

Fields

Modifier and Type	Field and Description
int	entityMentionCount
int	entityMentionPairCount
com.google.common.collect.Multiset<String>	entityMentionPairTypes
static String	goldViewName
int	relationArgumentDistance
com.google.common.collect.Multiset<String>	relationTypes
int	sentenceCount
static String	systemViewName
static String	targetRelationType
int	tokenCount

Constructor Summary

Constructors

Constructor and Description
GoldAnnotationStatsCalculator()

Method Summary

Modifier and Type	Method and Description
void	collectionProcessComplete()
static int	getTokenDistance(org.apache.uima.jcas.JCas systemView, IdentifiedAnnotation arg1, IdentifiedAnnotation arg2)
void	initialize(org.apache.uima.UimaContext context)
void	process(org.apache.uima.jcas.JCas jCas)

Methods inherited from class org.apache.uima.fit.component.JCasAnnotator_ImplBase

getLogger

Methods inherited from class org.apache.uima.analysis_component.JCasAnnotator_ImplBase

getRequiredCasInterface, process

Methods inherited from class org.apache.uima.analysis_component.Annotator_ImplBase

getCasInstancesRequired, hasNext, next

Methods inherited from class org.apache.uima.analysis_component.AnalysisComponent_ImplBase

batchProcessComplete, destroy, getContext, getResultSpecification, reconfigure, setResultSpecification

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

goldViewName

public static final String goldViewName

See Also:

Constant Field Values

systemViewName

public static final String systemViewName

See Also:

Constant Field Values

targetRelationType

public static final String targetRelationType

See Also:

Constant Field Values

tokenCount

public int tokenCount

sentenceCount

public int sentenceCount

entityMentionCount

public int entityMentionCount

entityMentionPairCount

public int entityMentionPairCount

relationArgumentDistance

public int relationArgumentDistance

relationTypes

public com.google.common.collect.Multiset<String> relationTypes

entityMentionPairTypes

public com.google.common.collect.Multiset<String> entityMentionPairTypes

Constructor Detail

GoldAnnotationStatsCalculator

public GoldAnnotationStatsCalculator()

Method Detail

initialize

public void initialize(org.apache.uima.UimaContext context)
                throws org.apache.uima.resource.ResourceInitializationException

Specified by:

initialize in interface org.apache.uima.analysis_component.AnalysisComponent

Overrides:

initialize in class org.apache.uima.fit.component.JCasAnnotator_ImplBase

Throws:

org.apache.uima.resource.ResourceInitializationException

collectionProcessComplete

public void collectionProcessComplete()
                               throws org.apache.uima.analysis_engine.AnalysisEngineProcessException

Specified by:

collectionProcessComplete in interface org.apache.uima.analysis_component.AnalysisComponent

Overrides:

collectionProcessComplete in class org.apache.uima.analysis_component.AnalysisComponent_ImplBase

Throws:

org.apache.uima.analysis_engine.AnalysisEngineProcessException

process

public void process(org.apache.uima.jcas.JCas jCas)
             throws org.apache.uima.analysis_engine.AnalysisEngineProcessException

Specified by:

process in class org.apache.uima.analysis_component.JCasAnnotator_ImplBase

Throws:

org.apache.uima.analysis_engine.AnalysisEngineProcessException

getTokenDistance

public static int getTokenDistance(org.apache.uima.jcas.JCas systemView,
                                   IdentifiedAnnotation arg1,
                                   IdentifiedAnnotation arg2)