org.apache.ctakes.relationextractor.ae.baselines

Class Baseline3EntityMentionPairRelationExtractorAnnotator

java.lang.Object

org.apache.uima.analysis_component.AnalysisComponent_ImplBase

org.apache.uima.analysis_component.Annotator_ImplBase

org.apache.uima.analysis_component.JCasAnnotator_ImplBase

org.apache.uima.fit.component.JCasAnnotator_ImplBase

org.cleartk.ml.CleartkAnnotator<String>

org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator

org.apache.ctakes.relationextractor.ae.baselines.Baseline3EntityMentionPairRelationExtractorAnnotator

All Implemented Interfaces:

org.apache.uima.analysis_component.AnalysisComponent, org.apache.uima.fit.factory.initializable.Initializable

@PipeBitInfo(name="Location of Annotator 3",
             description="Links each anatomical site with the closest entity of a type that\'s suitable for location_of, as long as there is no intervening anatomical site.",
             role=ANNOTATOR,
             dependencies={SENTENCE,IDENTIFIED_ANNOTATION},
             products=LOCATION_RELATION)
public class Baseline3EntityMentionPairRelationExtractorAnnotator
extends RelationExtractorAnnotator

This baseline links each anatomical site with the closest entity of a type that's suitable for location_of, as long as there is no intervening anatomical site.

Nested Class Summary

Nested classes/interfaces inherited from class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator

RelationExtractorAnnotator.IdentifiedAnnotationPair

Field Summary

Fields inherited from class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator

category_frequency, coin, NO_RELATION_CATEGORY, PARAM_PROBABILITY_OF_KEEPING_A_NEGATIVE_EXAMPLE, probabilityOfKeepingANegativeExample

Fields inherited from class org.cleartk.ml.CleartkAnnotator

classifier, dataWriter, PARAM_CLASSIFIER_FACTORY_CLASS_NAME, PARAM_DATA_WRITER_FACTORY_CLASS_NAME, PARAM_IS_TRAINING

Constructor Summary

Constructors

Constructor and Description
Baseline3EntityMentionPairRelationExtractorAnnotator()

Method Summary

Modifier and Type	Method and Description
String	classify(List<org.cleartk.ml.Feature> features) Predict an outcome given a set of features.
List<RelationExtractorAnnotator.IdentifiedAnnotationPair>	getCandidateRelationArgumentPairs(org.apache.uima.jcas.JCas identifiedAnnotationView, org.apache.uima.jcas.tcas.Annotation sentence) Selects the relevant mentions/annotations within a covering annotation for relation identification/extraction.
Class<? extends org.apache.uima.jcas.tcas.Annotation>	getCoveringClass()

Methods inherited from class org.apache.ctakes.relationextractor.ae.RelationExtractorAnnotator

clearCategoryFrequency, createRelation, getFeatureExtractors, getRelationCategory, getRelationClass, initialize, process

Methods inherited from class org.cleartk.ml.CleartkAnnotator

collectionProcessComplete, isTraining

Methods inherited from class org.apache.uima.fit.component.JCasAnnotator_ImplBase

getLogger

Methods inherited from class org.apache.uima.analysis_component.JCasAnnotator_ImplBase

getRequiredCasInterface, process

Methods inherited from class org.apache.uima.analysis_component.Annotator_ImplBase

getCasInstancesRequired, hasNext, next

Methods inherited from class org.apache.uima.analysis_component.AnalysisComponent_ImplBase

batchProcessComplete, destroy, getContext, getResultSpecification, reconfigure, setResultSpecification

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Baseline3EntityMentionPairRelationExtractorAnnotator

public Baseline3EntityMentionPairRelationExtractorAnnotator()

Method Detail

getCoveringClass

public Class<? extends org.apache.uima.jcas.tcas.Annotation> getCoveringClass()

Specified by:

getCoveringClass in class RelationExtractorAnnotator

getCandidateRelationArgumentPairs

public List<RelationExtractorAnnotator.IdentifiedAnnotationPair> getCandidateRelationArgumentPairs(org.apache.uima.jcas.JCas identifiedAnnotationView,
                                                                                                   org.apache.uima.jcas.tcas.Annotation sentence)

Description copied from class: RelationExtractorAnnotator

Selects the relevant mentions/annotations within a covering annotation for relation identification/extraction.

Specified by:

getCandidateRelationArgumentPairs in class RelationExtractorAnnotator

classify

public String classify(List<org.cleartk.ml.Feature> features)

Description copied from class: RelationExtractorAnnotator

Predict an outcome given a set of features. By default, this simply delegates to the object's classifier. Subclasses may override this method to implement more complex classification procedures.

Overrides:

classify in class RelationExtractorAnnotator

Parameters:

features - The features to be classified.

Returns:

The predicted outcome (label) for the features.